Evidence map›Paper›PMID 35352150›Full record

ArticleApplied microbiology and biotechnology2022

Applying biochemical and structural characterization of hydroxycinnamate catabolic enzymes from soil metagenome for lignin valorization strategies.

Thiago Augusto Gonçalves, Victoria Sodré, Stephanie Nemesio da Silva, Nathalia Vilela, Geizecler Tomazetto, Juscemácia Nascimento Araujo, João Renato C Muniz, Taícia Pacheco Fill, André Damasio, Wanius Garcia and 1 more

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In one paragraph

Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Thiago Augusto Gonçalves *Programa de Processos Tecnológicos e Ambientais, University of Sorocaba (UNISO), Sorocaba, SP, Brazil.
Victoria Sodré *Programa de Processos Tecnológicos e Ambientais, University of Sorocaba (UNISO), Sorocaba, SP, Brazil.
Stephanie Nemesio da SilvaLaboratory of Biology Chemical Microbial (LaBioQuiMi), Institute of Chemistry, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Nathalia VilelaPrograma de Processos Tecnológicos e Ambientais, University of Sorocaba (UNISO), Sorocaba, SP, Brazil.
Geizecler TomazettoDepartment of Biological and Chemical Engineering (BCE), Aarhus University, 8200, Aarhus, Denmark.
Juscemácia Nascimento AraujoCentro de Ciências Naturais e Humanas (CCNH), Universidade Federal do ABC (UFABC), Santo André, SP, Brazil.
João Renato C MunizSao Carlos Institute of Physics (IFSC), University of Sao Paulo (USP), Sao Carlos, SP, Brazil.
Taícia Pacheco FillLaboratory of Biology Chemical Microbial (LaBioQuiMi), Institute of Chemistry, University of Campinas (UNICAMP), Campinas, SP, Brazil.
André DamasioDepartment of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Wanius GarciaCentro de Ciências Naturais e Humanas (CCNH), Universidade Federal do ABC (UFABC), Santo André, SP, Brazil.
Fabio Marcio SquinaPrograma de Processos Tecnológicos e Ambientais, University of Sorocaba (UNISO), Sorocaba, SP, Brazil. fabio.squina@gmail.com.ORCID http://orcid.org/0000-0002-8154-7459
Universidade Estadual de Campinas (UNICAMP) · BRUniversidade Federal do ABC · BRAarhus University · DKUniversidade de Sorocaba · BRUniversidade Federal de São Carlos · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 428527/2018-3Conselho Nacional de Desenvolvimento Científico e Tecnológico 446256/2020-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/50590-4Fundação de Amparo à Pesquisa do Estado de São Paulo 2020/05784-3
6 · The paper itself

Abstract

The biocatalytic production of fuels and chemicals from plant biomass represents an attractive alternative to fossil fuel-based refineries. In this context, the mining and characterization of novel biocatalysts can promote disruptive innovation opportunities in the field of lignocellulose conversion and valorization. In the present work, we conducted the biochemical and structural characterization of two novel hydroxycinnamic acid catabolic enzymes, isolated from a lignin-degrading microbial consortium, a feruloyl-CoA synthetase, and a feruloyl-CoA hydratase-lyase, named LM-FCS2 and LM-FCHL2, respectively. Besides establishing the homology model structures for novel FCS and FCHL members with unique characteristics, the enzymes presented interesting biochemical features: LM-FCS2 showed stability in alkaline pHs and was able to convert a wide array of p-hydroxycinnamic acids to their respective CoA-thioesters, including sinapic acid; LM-FCHL2 efficiently converted feruloyl-CoA and p-coumaroyl-CoA into vanillin and 4-hydroxybenzaldehyde, respectively, and could produce vanillin directly from ferulic acid. The coupled reaction of LM-FCS2 and LM-FCHL2 produced vanillin, not only from commercial ferulic acid but also from a crude lignocellulosic hydrolysate. Collectively, this work illuminates the structure and function of two critical enzymes involved in converting ferulic acid into high-value molecules, thus providing valuable concepts applied to the development of plant biomass biorefineries. KEY POINTS: • Comprehensive characterization of feruloyl-CoA synthetase from metagenomic origin. • Novel low-resolution structures of hydroxycinnamate catabolic enzymes. • Production of vanillin via enzymatic reaction using lignocellulosic hydrolysates.

Indexed as

LigninMetagenomeEscherichia coliHyperlipidemia, Familial CombinedSoilLigninSoilBiomassBiorefineryEnoyl-CoA aldolaseFerulic acidFeruloyl-CoA synthetaseVanillin

Identifiers

PMID35352150
OpenAlexW4220855677

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.