Evidence map›Paper›PMID 35352015›Full record

ArticleThe ISME journal2022

Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.

Daan R Speth, Feiqiao B Yu, Stephanie A Connon, Sujung Lim, John S Magyar, Manet E Peña-Salinas, Stephen R Quake, Victoria J Orphan

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 52 citations in OpenAlex.

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  12. Ethane-oxidising archaea couple CONature communications · 2024
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  13. Evolution of pH-sensitive transcription termination inProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Daan R SpethDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA. dspeth@mpi-bremen.de.ORCID http://orcid.org/0000-0002-2361-5935
Feiqiao B YuDepartment of Bioengineering, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3416-3046
Stephanie A ConnonDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.
Sujung LimDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0001-6040-729X
John S MagyarDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0002-3586-8286
Manet E Peña-SalinasFacultad de Ciencias Marinas, Universidad Autónoma de Baja California, Ensenada, Mexico.ORCID http://orcid.org/0000-0002-5835-0455
Stephen R QuakeDepartment of Bioengineering, Stanford University, Stanford, CA, USA.
Victoria J OrphanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA. vorphan@gps.caltech.edu.ORCID http://orcid.org/0000-0002-5374-6178
California Institute of Technology · USChan Zuckerberg Initiative (United States) · USUniversidad Autónoma de Baja California · MX

Funding

DOE | Office of Science (SC) DE-SC0016469John Templeton Foundation (JTF) 51250Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) 019.153LW.039
6 · The paper itself

Abstract

Hydrothermal vents have been key to our understanding of the limits of life, and the metabolic and phylogenetic diversity of thermophilic organisms. Here we used environmental metagenomics combined with analysis of physicochemical data and 16S rRNA gene amplicons to characterize the sediment-hosted microorganisms at the recently discovered Auka vents in the Gulf of California. We recovered 325 metagenome assembled genomes (MAGs) representing 54 phyla, over 30% of those currently known, showing the microbial community in Auka hydrothermal sediments is highly diverse. 16S rRNA gene amplicon screening of 224 sediment samples across the vent field indicates that the MAGs retrieved from a single site are representative of the microbial community in the vent field sediments. Metabolic reconstruction of a vent-specific, deeply branching clade within the Desulfobacterota suggests these organisms metabolize sulfur using novel octaheme cytochrome-c proteins related to hydroxylamine oxidoreductase. Community-wide comparison between Auka MAGs and MAGs from Guaymas Basin revealed a remarkable 20% species-level overlap, suggestive of long-distance species transfer over 400 km and subsequent sediment colonization. Optimal growth temperature prediction on the Auka MAGs, and thousands of reference genomes, shows that thermophily is a trait that has evolved frequently. Taken together, our Auka vent field results offer new perspectives on our understanding of hydrothermal vent microbiology.

Indexed as

Hydrothermal VentsMicrobiotaGeologic SedimentsMetagenomicsPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID35352015
PMCPMC9213671
OpenAlexW4220973876

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.