Evidence map›Paper›PMID 35351978›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2022

Esophageal squamous cell carcinoma with basaloid features are genetically and prognostically similar to conventional squamous cell carcinoma.

Madeline A Sauer, Jing Yang, Raymond A Isidro, Fei Dong, Deepa T Patil, Jon O Wee, Agoston T Agoston, Vikram Deshpande, Lei Zhao

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Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Madeline A SauerDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-5865-1813
Jing YangDepartment of Pathology, Redwood City Medical Center, The Permanente Medical Group, Boston, MA, USA.
Raymond A IsidroDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0002-1774-8643
Fei DongDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0003-3769-0247
Deepa T PatilDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.ORCID 0000-0001-7837-1299
Jon O WeeHarvard Medical School, Boston, MA, USA.
Agoston T AgostonDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Vikram DeshpandeHarvard Medical School, Boston, MA, USA.
Lei ZhaoDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA. lzhao19@bwh.harvard.edu.
Brigham and Women's Hospital · USHarvard University · USKaiser Permanente Redwood City Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We compared clinicopathologic and molecular features of esophageal squamous cell carcinoma (SCC) with basaloid features to conventional SCC using surgical resections of treatment naïve esophageal carcinomas and cases available from the TCGA database. Twenty-two cases of SCC with basaloid features were identified in the Mass General Brigham pathology archives, including 9 cases with pure basaloid morphology and 13 cases with mixed other features such as conventional well- or poorly differentiated areas or sarcomatoid areas. Thirty-eight cases of conventional SCC matched by tumor stage were used as controls. HPV infection status was tested by p16 immunohistochemistry and HPV mRNA ISH. Digital slides for 94 cases of esophageal SCC from TCGA found in the Genomic Data Commons (GDC) Data Portal were reviewed. Five cases of SCC with basaloid features were identified. Genomic profiles of SCC with basaloid features were compared to the rest of 89 SCCs without basaloid features. In addition, eight tumor sections from six patients selected from our cohort underwent in-house molecular profiling. Compared to conventional SCC, SCC with basaloid features were more frequently associated with diffuse or multifocal squamous dysplasia (p < 0.001). P16 IHC was positive in 2/13 cases, whereas HPV mRNA ISH was negative in 17/17 cases (including both p16-positive cases). SCC with basaloid features and conventional SCC from TCGA showed similar rates of TP53 mutations, CDKN2A/B deletions, and CCDN1 amplifications. TP53 variants were identified in all in-house samples that had sufficient coverage. Survival analyses between SCC with basaloid features versus conventional SCC (matched for tumor stage) did not reveal any statistically significant differences. In conclusion, esophageal SCC with basaloid features has similar survival and genomic alterations to those of conventional SCC, are more frequently associated with diffuse or multifocal dysplasia, and are not associated with HPV (high-risk strains) infection.

Indexed as

Carcinoma, Squamous CellEsophageal NeoplasmsEsophageal Squamous Cell CarcinomaPapillomavirus InfectionsBiomarkers, TumorHumansRNA, MessengerBiomarkers, TumorRNA, Messenger

Identifiers

PMID35351978
OpenAlexW4220678876

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.