Evidence map›Paper›PMID 35351876›Full record

ArticleNature communications2022

BAF complex-mediated chromatin relaxation is required for establishment of X chromosome inactivation.

Andrew Keniry, Natasha Jansz, Linden J Gearing, Iromi Wanigasuriya, Joseph Chen, Christian M Nefzger, Peter F Hickey, Quentin Gouil, Joy Liu, Kelsey A Breslin and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. ASPEN: Robust detection of allelic dynamics in single cell RNA-seq.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 1 country.

Andrew KeniryThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia. keniry@wehi.edu.au.ORCID http://orcid.org/0000-0002-4061-9540
Natasha JanszThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-3319-8493
Linden J GearingThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0003-3508-3056
Iromi WanigasuriyaThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Joseph ChenDepartment of Anatomy and Developmental Biology, Monash University, Clayton, VIC, Australia.
Christian M NefzgerDepartment of Anatomy and Developmental Biology, Monash University, Clayton, VIC, Australia.ORCID http://orcid.org/0000-0003-4631-5633
Peter F HickeyThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-8153-6258
Quentin GouilThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-5142-7886
Joy LiuThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Kelsey A BreslinThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0003-4616-8215
Megan IminitoffThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Tamara BeckThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Andres Tapia Del FierroThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-5800-0885
Lachlan WhiteheadThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-4388-9642
Andrew JarrattThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Sarah A KinkelThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Phillippa C TaberlaySchool of Medicine, College of Health and Medicine, University of Tasmania, Hobart, TAS, Australia.ORCID http://orcid.org/0000-0002-5298-8730
Tracy WillsonThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Miha PakuschThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.ORCID http://orcid.org/0000-0002-7383-0609
Douglas J HiltonThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Jose M PoloDepartment of Anatomy and Developmental Biology, Monash University, Clayton, VIC, Australia.ORCID http://orcid.org/0000-0002-2531-778X
Marnie E BlewittThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia. blewitt@wehi.edu.au.ORCID http://orcid.org/0000-0002-2984-1474
The University of Melbourne · AUWalter and Eliza Hall Institute of Medical Research · AUAustralian Regenerative Medicine Institute · AUThe University of Queensland · AUUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The process of epigenetic silencing, while fundamentally important, is not yet completely understood. Here we report a replenishable female mouse embryonic stem cell (mESC) system, Xmas, that allows rapid assessment of X chromosome inactivation (XCI), the epigenetic silencing mechanism of one of the two X chromosomes that enables dosage compensation in female mammals. Through a targeted genetic screen in differentiating Xmas mESCs, we reveal that the BAF complex is required to create nucleosome-depleted regions at promoters on the inactive X chromosome during the earliest stages of establishment of XCI. Without this action gene silencing fails. Xmas mESCs provide a tractable model for screen-based approaches that enable the discovery of unknown facets of the female-specific process of XCI and epigenetic silencing more broadly.

Indexed as

RNA, Long NoncodingX Chromosome InactivationAnimalsChromatinDosage Compensation, GeneticEpigenesis, GeneticFemaleMiceX ChromosomeChromatinRNA, Long Noncoding

Identifiers

PMID35351876
PMCPMC8964718
OpenAlexW4220858326

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.