Evidence map›Paper›PMID 35350377›Full record

ArticleFrontiers in cell and developmental biology2022

Profiling Temporal Changes of the Pineal Transcriptomes at Single Cell Level Upon Neonatal HIBD.

Xin Ding, Tao Pan, Qiuyan Tian, Wenxi Huang, Lauren S Hayashi, Qin Liu, Fuyong Li, Li-Xiao Xu, Po Miao, Xiaofeng Yang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Xin DingSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Tao PanSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Qiuyan TianPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Wenxi HuangUndergraduate Program, University of Virginia, Charlottesville, VA, United States.
Lauren S HayashiIRTA Fellow, National Institutes of Health, Bethesda, MD, United States.
Qin LiuPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Fuyong LiPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Li-Xiao XuPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Po MiaoSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Xiaofeng YangSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Bin SunSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Chen-Xi FengPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Xing FengSoochow Key Laboratory of Prevention and Treatment of Child Brain Injury, Children's Hospital of Soochow University, Suzhou, China.
Mei LiPediatrics Research Institute, Children's Hospital of Soochow University, Suzhou, China.
Jian HuangSchool of Basic Medicine and Biological Sciences, Medical College of Soochow University, Suzhou, China.
Soochow University · CNHuazhong University of Science and Technology · CNNational Institutes of Health · USUniversity of Virginia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neonatal hypoxic-ischemic brain damage (HIBD) often results in various neurological deficits. Among them, a common, yet often neglected, symptom is circadian rhythm disorders. Previous studies revealed that the occurrence of cysts in the pineal gland, an organ known to regulate circadian rhythm, is associated with circadian problems in children with HIBD. However, the underlying mechanisms of pineal dependent dysfunctions post HIBD remain largely elusive. Here, by performing 10x single cell RNA sequencing, we firstly molecularly identified distinct pineal cell types and explored their transcriptome changes at single cell level at 24 and 72 h post neonatal HIBD. Bioinformatic analysis of cell prioritization showed that both subtypes of pinealocytes, the predominant component of the pineal gland, were mostly affected. We then went further to investigate how distinct pineal cell types responded to neonatal HIBD. Within pinealocytes, we revealed a molecularly defined β to α subtype conversion induced by neonatal HIBD. Within astrocytes, we discovered that all three subtypes responded to neonatal HIBD, with differential expression of reactive astrocytes markers. Two subtypes of microglia cells were both activated by HIBD, marked by up-regulation of

Indexed as

astrocytehypoxic-ischemic brain damagemicrogliapineal glandpinealocytepyroptosissingle cell RNA sequencing

Identifiers

PMID35350377
PMCPMC8958010
OpenAlexW4220980027

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.