Evidence map›Paper›PMID 35350206›Full record

ArticleResearch square2022

Robust, persistent adaptive immune responses to SARS-CoV-2 in the oropharyngeal lymphoid tissue of children.

Qin Xu, Pedro Milanez-Almeida, Andrew J Martins, Andrea J Radtke, Kenneth B Hoehn, Jinguo Chen, Can Liu, Juanjie Tang, Gabrielle Grubbs, Sydney Stein and 30 more

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

40 authors at 10 institutions in 5 countries.

Qin XuCell Signaling and Immunity Section, Laboratory of Immune System Biology (LISB), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD.ORCID 0000-0003-1812-3108
Pedro Milanez-AlmeidaCenter for Human Immunology, NIAID, NIH, Bethesda, MD.ORCID 0000-0001-8285-957X
Andrew J MartinsMultiscale Systems Biology Section, LISB, NIAID, NIH, Bethesda, MD.ORCID 0000-0002-1832-1924
Andrea J RadtkeCenter for Advanced Tissue Imaging, LISB, NIAID, NIH Bethesda, MD.ORCID 0000-0003-4379-8967
Kenneth B HoehnDepartment of Pathology, Yale School of Medicine, New Haven, CT.ORCID 0000-0003-0411-4307
Jinguo ChenCenter for Human Immunology, NIAID, NIH, Bethesda, MD.
Can LiuMultiscale Systems Biology Section, LISB, NIAID, NIH, Bethesda, MD.ORCID 0000-0002-8411-3891
Juanjie TangDivision of Viral Products, Center for Biologics Evaluation and Research (CBER), Food and Drug Administration (FDA), Silver Spring, MD.
Gabrielle GrubbsDivision of Viral Products, Center for Biologics Evaluation and Research (CBER), Food and Drug Administration (FDA), Silver Spring, MD.ORCID 0000-0003-4302-9535
Sydney SteinEmerging Pathogens Section, Critical Care Medicine Department, Clinical Center (CC), NIH, Bethesda, MD.ORCID 0000-0002-0259-4485
Sabrina RamelliEmerging Pathogens Section, Critical Care Medicine Department, Clinical Center (CC), NIH, Bethesda, MD.
Juraj KabatCenter for Advanced Tissue Imaging, LISB, NIAID, NIH Bethesda, MD.
Hengameh BehzadpourDivision of Pediatric Otolaryngology, Children's National Hospital, Washington, DC.
Maria KarkanitsaLaboratory of Immuno-Engineering, National Institute of Biomedical Imaging and Bioengineering (NIBIB), NIH, Bethesda, MD.
Jacquelyn SpathiesTrans-NIH Shared Resource on Biomedical Engineering and Physical Science, NIBIB, NIH, Bethesda, MD.
Heather KalishTrans-NIH Shared Resource on Biomedical Engineering and Physical Science, NIBIB, NIH, Bethesda, MD.
Lela KardavaB-cell Immunology Section, Laboratory of Immunoregulation, NIAID, NIH, Bethesda, MD.ORCID 0000-0001-9135-6026
Martha KirbyNational Human Genome Research Institute (NHGRI), NIH, Bethesda, MD.
Foo CheungCenter for Human Immunology, NIAID, NIH, Bethesda, MD.
Silvia PreiteCell Signaling and Immunity Section, Laboratory of Immune System Biology (LISB), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD.
Patrick C DunckerCytek Biosciences, Fremont, CA.
Nahir RomeroDivision of Otolaryngology, Department of Surgery, George Washington University School of Medicine and Health Sciences, Washington, DC.
Diego PreciadoDivision of Pediatric Otolaryngology, Children's National Hospital, Washington, DC.
Lyuba GitmanDivision of Pediatric Otolaryngology, Children's National Hospital, Washington, DC.
Galina KorolevaCenter for Human Immunology, NIAID, NIH, Bethesda, MD.
Grace SmithLaboratory of Pathology, Center for Cancer Research, National Cancer Institute (NCI), NIH, Bethesda, MD.ORCID 0000-0001-6381-0391
Arthur ShafferLymphoid Malignancies Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD.
Ian T McBainCell Signaling and Immunity Section, Laboratory of Immune System Biology (LISB), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD.
Stefania PittalugaLaboratory of Pathology, Center for Cancer Research, National Cancer Institute (NCI), NIH, Bethesda, MD.ORCID 0000-0001-7688-1439
Ronald N GermainCenter for Advanced Tissue Imaging, LISB, NIAID, NIH Bethesda, MD.ORCID 0000-0003-1495-9143
Richard AppsCenter for Human Immunology, NIAID, NIH, Bethesda, MD.
Kaitlyn SadtlerLaboratory of Immuno-Engineering, National Institute of Biomedical Imaging and Bioengineering (NIBIB), NIH, Bethesda, MD.
Susan MoirB-cell Immunology Section, Laboratory of Immunoregulation, NIAID, NIH, Bethesda, MD.
Daniel S ChertowEmerging Pathogens Section, Critical Care Medicine Department, Clinical Center (CC), NIH, Bethesda, MD.ORCID 0000-0002-1675-1728
Steven H KleinsteinDepartment of Pathology, Yale School of Medicine, New Haven, CT.ORCID 0000-0003-4957-1544
Surender KhuranaDivision of Viral Products, Center for Biologics Evaluation and Research (CBER), Food and Drug Administration (FDA), Silver Spring, MD.ORCID 0000-0002-0593-7965
John S TsangCenter for Human Immunology, NIAID, NIH, Bethesda, MD.ORCID 0000-0003-3186-3047
Pamela MuddDivision of Pediatric Otolaryngology, Children's National Hospital, Washington, DC.
Pamela L SchwartzbergCell Signaling and Immunity Section, Laboratory of Immune System Biology (LISB), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD.ORCID 0000-0001-6318-9187
Kalpana ManthiramCell Signaling and Immunity Section, Laboratory of Immune System Biology (LISB), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Bethesda, MD.
National Institutes of Health · USChildren's National · USCenter for Biologics Evaluation and Research · USNational Institute of Allergy and Infectious Diseases · USNational Health Research Institutes · TWYale University · USAdvanced Tissue (United States) · USGeorge Washington University · USLocal Initiatives Support Corporation · USUniversity of Cambridge · GB

Funding

Infectious Diseases Research Technologies Core - BethesdaZICAI001051 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHERRY, JAMES · 2009 to 2025
$226.1M
Genetic and Biochemical Approaches to Tyrosine Kinase and Lymphocyte SignalingZIAAI001240 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SCHWARTZBERG, PAMELA · 2019 to 2025
$18.8M
NHGRI/DIR Flow Cytometry CoreZICHG200350 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ANDERSON, STACIE · 2010 to 2025
$16.3M
Micro Analytical ImmunochemistryZICEB000076 · NIBIB · NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING · PI KALISH, HEATHER · 2011 to 2025
$6.3M
ImmunoengineeringZIAEB000093 · NIBIB · NATIONAL INSTITUTE OF BIOMEDICAL IMAGING AND BIOENGINEERING · PI SADTLER, KAITLYN · 2020 to 2025
$5.5M
COMPUTATIONAL TOOLS FOR THE ANALYSIS OF HIGH-THROUGHPUT IMMUNOGLOBULIN SEQUENCING EXPERIMENTSR01AI104739 · NIAID · YALE UNIVERSITY · PI KLEINSTEIN, STEVEN H. · 2014 to 2022
$3.6M
Evaluation of Oropharyngeal responses to SARS-CoV-2ZIAAI001345 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI SCHWARTZBERG, PAMELA · 2021 to 2025
$1.3M
Immunologic Studies Associated with COVID-19 ZIAAI001325 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MOIR, SUSAN · 2020 to 2025
$1.3M
Systems Immunology of COVID-19ZIAAI001266 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI TSANG, JOHN · 2020 to 2022
$1.2M
Clinical and Molecular Features of Coronavirus Disease 2019ZIACL090070 · CLC · CLINICAL CENTER · PI CHERTOW, DANIEL S · 2020 to 2025
$0k
NIAID NIH HHS R01 AI104739
6 · The paper itself

Abstract

SARS-CoV-2 infection triggers adaptive immune responses from both T and B cells. However, most studies focus on peripheral blood, which may not fully reflect immune responses in lymphoid tissues at the site of infection. To evaluate both local and systemic adaptive immune responses to SARS-CoV-2, we collected peripheral blood, tonsils, and adenoids from 110 children undergoing tonsillectomy/adenoidectomy during the COVID-19 pandemic and found 24 with evidence of prior SARS-CoV-2 infection, including detectable neutralizing antibodies against multiple viral variants. We identified SARS-CoV-2-specific germinal center (GC) and memory B cells; single cell BCR sequencing showed that these virus-specific B cells were class-switched and somatically hypermutated, with overlapping clones in the adenoids and tonsils. Oropharyngeal tissues from COVID-19-convalescent children showed persistent expansion of GC and anti-viral lymphocyte populations associated with an IFN-γ-type response, with particularly prominent changes in the adenoids, as well as evidence of persistent viral RNA in both tonsil and adenoid tissues of many participants. Our results show robust, tissue-specific adaptive immune responses to SARS-CoV-2 in the upper respiratory tract of children weeks to months after acute infection, providing evidence of persistent localized immunity to this respiratory virus.

Identifiers

PMID35350206
PMCPMC8963700
OpenAlexW4220714457

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.