Evidence map›Paper›PMID 35349591›Full record

ArticlePloS one2022

Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs.

Melissa Kelley, Mellie June Paulines, George Yoshida, Ryan Myers, Manasses Jora, Joel P Levoy, Balasubrahmanyam Addepalli, Joshua B Benoit, Patrick A Limbach

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Stress-induced modification ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Fullerenol CInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Melissa KelleyDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.
Mellie June PaulinesDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.
George YoshidaDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.
Ryan MyersDepartment of Biological Sciences, University of Cincinnati, Cincinnati, Ohio, United States of America.ORCID 0000-0001-7488-1937
Manasses JoraDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.ORCID 0000-0002-1999-1508
Joel P LevoyDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.
Balasubrahmanyam AddepalliDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, Cincinnati, Ohio, United States of America.
Patrick A LimbachDepartment of Chemistry, University of Cincinnati, Cincinnati, Ohio, United States of America.ORCID 0000-0003-1526-4546
University of Cincinnati · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptococcus neoformans is a fungus that is able to survive abnormally high levels of ionizing radiation (IR). The radiolysis of water by IR generates reactive oxygen species (ROS) such as H2O2 and OH-. C. neoformans withstands the damage caused by IR and ROS through antioxidant production and enzyme-catalyzed breakdown of ROS. Given these particular cellular protein needs, questions arise whether transfer ribonucleic acids molecules (tRNAs) undergo unique chemical modifications to maintain their structure, stability, and/or function under such environmental conditions. Here, we investigated the effects of IR and H2O2 exposure on tRNAs in C. neoformans. We experimentally identified the modified nucleosides present in C. neoformans tRNAs and quantified changes in those modifications upon exposure to oxidative conditions. To better understand these modified nucleoside results, we also evaluated tRNA pool composition in response to the oxidative conditions. We found that regardless of environmental conditions, tRNA modifications and transcripts were minimally affected. A rationale for the stability of the tRNA pool and its concomitant profile of modified nucleosides is proposed based on the lack of codon bias throughout the C. neoformans genome and in particular for oxidative response transcripts. Our findings suggest that C. neoformans can rapidly adapt to oxidative environments as mRNA translation/protein synthesis are minimally impacted by codon bias.

Indexed as

CryptococcosisCryptococcus neoformansHydrogen PeroxideNucleosidesOxidantsRadiation, IonizingReactive Oxygen SpeciesRNA, TransferHydrogen PeroxideNucleosidesOxidantsReactive Oxygen SpeciesRNA, Transfer

Identifiers

PMID35349591
PMCPMC8963569
OpenAlexW4220870552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.