Evidence map›Paper›PMID 35347136›Full record

ArticleNature communications2022

Nasal airway transcriptome-wide association study of asthma reveals genetically driven mucus pathobiology.

Satria P Sajuthi, Jamie L Everman, Nathan D Jackson, Benjamin Saef, Cydney L Rios, Camille M Moore, Angel C Y Mak, Celeste Eng, Ana Fairbanks-Mahnke, Sandra Salazar and 16 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Observational
  5. Article
  6. Article
  7. Review
  8. Article
  9. Airway epithelial heterogeneity and mucus plugging in asthmatic bronchioles.American journal of respiratory and critical care medicine · 2026
    Article
  10. Review
  11. Article
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  13. Article
  14. Article
  15. Article
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  18. Article
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  20. Emerging cell and molecular targets for treating mucus hypersecretion in asthma.Allergology international : official journal of the Japanese Society of Allergology · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 2 countries.

Satria P SajuthiCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0001-9598-7298
Jamie L EvermanCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.ORCID http://orcid.org/0000-0002-1935-4672
Nathan D JacksonCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Benjamin SaefCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Cydney L RiosCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Camille M MooreCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Angel C Y MakDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-5372-4198
Celeste EngDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Ana Fairbanks-MahnkeCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA.
Sandra SalazarDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Jennifer ElhawaryDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Scott HuntsmanDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Vivian MedinaCentro de Neumología Pediátrica, San Juan, PR, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Soren GermerNew York Genome Center, New York, NY, USA.ORCID http://orcid.org/0000-0002-6038-8508
Michael C ZodyNew York Genome Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-6594-7199
Gonçalo AbecasisCenter for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-1509-1825
Hyun Min KangCenter for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA.
Kenneth M RiceDepartment of Biostatistics, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-3071-7278
Rajesh KumarAnn and Robert H. Lurie Children's Hospital of Chicago, Department of Pediatrics, Northwestern University, Chicago, IL, USA.
Noah A ZaitlenDepartment of Neurology and Computational Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Sam OhDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2815-6037
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
José Rodríguez-SantanaCentro de Neumología Pediátrica, San Juan, PR, USA.
Esteban G BurchardDepartment of Medicine, University of California-San Francisco, San Francisco, CA, USA.
Max A SeiboldCenter for Genes, Environment, and Health, National Jewish Health, Denver, CO, USA. seiboldm@njhealth.org.ORCID http://orcid.org/0000-0002-8685-4263
National Jewish Health · USUniversity of California, San Francisco · USCentro de Neumologia Pediatrica · PRNew York Genome Center · USUniversity of Michigan · USUniversity of Washington · USNorthwestern University · USUniversity of California, Los Angeles · USUniversity of Colorado Hospital · US

Funding

New York Center for Collaborative Research In Common Disease Genomics: Genome Aggregation and Joint Variant Calling for CCDG Freeze2UM1HG008901 · NHGRI · NEW YORK GENOME CENTER · PI MANIATIS, THOMAS P, WIGLER, MICHAEL H · 2016 to 2020
$56.6M
Role of miRNAs in Th2-Driven inflammation in AsthmaP01HL107202 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FAHY, JOHN V · 2012 to 2023
$23.3M
Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
Transcriptomic and Genetic Endotyping of Exacerbation-Prone AsthmaticsP01HL132821 · NHLBI · NATIONAL JEWISH HEALTH · PI SEIBOLD, MAX A · 2017 to 2021
$9.0M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
Social Interventions to address disparities In young adult tobacco useP60MD006902 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BIBBINS-DOMINGO, KIRSTEN · 2012 to 2016
$6.4M
Methods for Genome-wide Association Studies in Admixed PopulationsR01HG006399 · NHGRI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI PRICE, ALKES L · 2011 to 2024
$6.3M
Rare variants and NHLBI traits in deeply phenotyped cohortsU01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2017 to 2018
$5.6M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Optimizing imputation for diverse populations in a distributed frameworkU01HG009080 · NHGRI · STANFORD UNIVERSITY · PI KENNY, EIMEAR ELIZABETH · 2016 to 2020
$5.2M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NHGRI NIH HHS R01 HG006399NHGRI NIH HHS U01 HG009080NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG008901NHLBI NIH HHS HHSN268201800001CNHLBI NIH HHS P01 HL107202NHLBI NIH HHS P01 HL132821NHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01 HL117626NHLBI NIH HHS R01 HL120393NHLBI NIH HHS R01 HL128439NHLBI NIH HHS R01 HL135156NHLBI NIH HHS R01 HL141845NHLBI NIH HHS R01 HL141992NHLBI NIH HHS U01 HL120393NIEHS NIH HHS HHSN268201600032CNIEHS NIH HHS R01 ES015794NIMHD NIH HHS P60 MD006902NIMHD NIH HHS R01 MD010443
6 · The paper itself

Abstract

To identify genetic determinants of airway dysfunction, we performed a transcriptome-wide association study for asthma by combining RNA-seq data from the nasal airway epithelium of 681 children, with UK Biobank genetic association data. Our airway analysis identified 95 asthma genes, 58 of which were not identified by transcriptome-wide association analyses using other asthma-relevant tissues. Among these genes were MUC5AC, an airway mucin, and FOXA3, a transcriptional driver of mucus metaplasia. Muco-ciliary epithelial cultures from genotyped donors revealed that the MUC5AC risk variant increases MUC5AC protein secretion and mucus secretory cell frequency. Airway transcriptome-wide association analyses for mucus production and chronic cough also identified MUC5AC. These cis-expression variants were associated with trans effects on expression; the MUC5AC variant was associated with upregulation of non-inflammatory mucus secretory network genes, while the FOXA3 variant was associated with upregulation of type-2 inflammation-induced mucus-metaplasia pathway genes. Our results reveal genetic mechanisms of airway mucus pathobiology.

Indexed as

AsthmaTranscriptomeChildEpitheliumHumansMetaplasiaMucin 5ACMucusMucin 5AC

Identifiers

PMID35347136
PMCPMC8960819
OpenAlexW4220987111

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.