Evidence map›Paper›PMID 35346642›Full record

ArticleBiophysical journal2022

Long-range electrostatic interactions significantly modulate the affinity of dynein for microtubules.

Ashok Pabbathi, Lawrence Coleman, Subash Godar, Apurba Paul, Aman Garlapati, Matheu Spencer, Jared Eller, Joshua Daniel Alper

Abstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ashok PabbathiDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina.
Lawrence ColemanDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina.
Subash GodarDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina.
Apurba PaulDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina; Eukaryotic Pathogen Innovations Center, Clemson, University, Clemson, South Carolina.
Aman GarlapatiSchool of Mathematical and Statistical Sciences, Clemson University, Clemson, South Carolina.
Matheu SpencerDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina.
Jared EllerDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina; Department of Genetics and Biochemistry, Clemson University, Clemson, South Carolina.
Joshua Daniel AlperDepartment of Physics and Astronomy, Clemson University, Clemson, South Carolina; Eukaryotic Pathogen Innovations Center, Clemson, University, Clemson, South Carolina; Department of Biological Sciences, Clemson University, Clemson, South Carolina. Electronic address: alper@clemson.edu.

Funding

The role of acetate fermentation in Entamoeba histolytica growth and infectionP20GM109094 · NIGMS · CLEMSON UNIVERSITY · PI MORRIS, MEREDITH T · 2016 to 2020
$10.4M
Transnational Research Imaging Core (TRI)P30GM131959 · NIGMS · CLEMSON UNIVERSITY · PI VYAVAHARE, NAREN R · 2019 to 2023
$5.9M
Targeting flagellar motility in the treatment of kinetoplastid diseasesR15AI137979 · NIAID · CLEMSON UNIVERSITY · PI SANABRIA, HUGO · 2019 to 2019
$437k
NIAID NIH HHS R15 AI137979NIGMS NIH HHS P20 GM109094NIGMS NIH HHS P30 GM131959
6 · The paper itself

Abstract

The dynein family of microtubule minus-end-directed motor proteins drives diverse functions in eukaryotic cells, including cell division, intracellular transport, and flagellar beating. Motor protein processivity, which characterizes how far a motor walks before detaching from its filament, depends on the interaction between its microtubule-binding domain (MTBD) and the microtubule. Dynein's MTBD switches between high- and low-binding affinity states as it steps. Significant structural and functional data show that specific salt bridges within the MTBD and between the MTBD and the microtubule govern these affinity state shifts. However, recent computational work suggests that nonspecific, long-range electrostatic interactions between the MTBD and the microtubule may also play an important role in the processivity of dynein. To investigate this hypothesis, we mutated negatively charged amino acids remote from the dynein MTBD-microtubule-binding interface to neutral residues and measured the binding affinity using microscale thermophoresis and optical tweezers. We found a significant increase in the binding affinity of the mutated MTBDs for microtubules. Furthermore, we found that charge screening by free ions in solution differentially affected the binding and unbinding rates of MTBDs to microtubules. Together, these results demonstrate a significant role for long-range electrostatic interactions in regulating dynein-microtubule affinity. Moreover, these results provide insight into the principles that potentially underlie the biophysical differences between molecular motors with various processivities and protein-protein interactions more generally.

Indexed as

DyneinsMolecular Dynamics SimulationBinding SitesMicrotubulesStatic ElectricityDyneins

Identifiers

PMID35346642
PMCPMC9117880

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.