Evidence map›Paper›PMID 35345821›Full record

ArticleClinical epidemiology2022

Unraveling COVID-19: A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS.

Kristin Kostka, Talita Duarte-Salles, Albert Prats-Uribe, Anthony G Sena, Andrea Pistillo, Sara Khalid, Lana Y H Lai, Asieh Golozar, Thamir M Alshammari, Dalia M Dawoud and 65 more

Abstract read
In one paragraph

Article in Clinical epidemiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  10. Semi-supervised ROC analysis for reliable and streamlined evaluation of phenotyping algorithms.Journal of the American Medical Informatics Association : JAMIA · 2024
    Article
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  15. Observational
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  17. Transforming and evaluating the UK Biobank to the OMOP Common Data Model for COVID-19 research and beyond.Journal of the American Medical Informatics Association : JAMIA · 2022
    Observational
  18. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

75 authors.

Kristin KostkaIQVIA, Cambridge, MA, USA.ORCID 0000-0003-2595-8736
Talita Duarte-SallesFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.ORCID 0000-0002-8274-0357
Albert Prats-UribeCentre for Statistics in Medicine, NDORMS, University of Oxford, Oxford, UK.ORCID 0000-0003-1202-9153
Anthony G SenaJanssen Research & Development, Titusville, NJ, USA.
Andrea PistilloFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.ORCID 0000-0002-4467-0220
Sara KhalidCentre for Statistics in Medicine, NDORMS, University of Oxford, Oxford, UK.
Lana Y H LaiSchool of Medical Sciences, University of Manchester, Manchester, UK.
Asieh GolozarRegeneron Pharmaceuticals, Tarrytown, NY, USA.
Thamir M AlshammariCollege of Pharmacy, Riyadh Elm University, Riyadh, Saudi Arabia.ORCID 0000-0002-5630-2468
Dalia M DawoudNational Institute for Health and Care Excellence, London, UK.
Fredrik NybergSchool of Public Health and Community Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0003-0892-5668
Adam B WilcoxDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA.
Alan AndrycJanssen Research & Development, Titusville, NJ, USA.ORCID 0000-0002-2663-2298
Andrew WilliamsTufts Institute for Clinical Research and Health Policy Studies, Boston, MA, USA.
Anna OstropoletsDepartment of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, USA.
Carlos AreiaNuffield Department of Clinical Neurosciences, University of Oxford, Oxford, UK.
Chi Young JungDivision of Respiratory and Critical Care Medicine, Department of Internal Medicine, Daegu Catholic University Medical Center, Daegu, South Korea.
Christopher A HarleUniversity of Florida Health, Gainesville, FL, USA.
Christian G ReichIQVIA, Cambridge, MA, USA.ORCID 0000-0002-3641-055X
Clair BlacketerJanssen Research & Development, Titusville, NJ, USA.
Daniel R MoralesDivision of Population Health and Genomics, University of Dundee, Dundee, UK.
David A DorrDepartment of Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA.
Edward BurnFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.ORCID 0000-0002-9286-1128
Elena RoelFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.
Eng Hooi TanCentre for Statistics in Medicine, NDORMS, University of Oxford, Oxford, UK.
Evan MintyO'Brien Institute for Public Health, Faculty of Medicine, University of Calgary, Calgary, Canada.
Frank DeFalcoJanssen Research & Development, Titusville, NJ, USA.
Gabriel de MaeztuIOMED, Barcelona, Spain.
Gigi LiporiUniversity of Florida Health, Gainesville, FL, USA.
Hiba AlghoulFaculty of Medicine, Islamic University of Gaza, Gaza, Palestine.ORCID 0000-0001-8234-5843
Hong ZhuNanfang Hospital, Southern Medical University, Guangzhou, People's Republic of China.
Jason A ThomasDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA.
Jiang BianUniversity of Florida Health, Gainesville, FL, USA.
Jimyung ParkDepartment of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, South Korea.ORCID 0000-0002-6998-2546
Jordi Martínez RoldánDirector of Innovation and Digital Transformation, Hospital del Mar, Barcelona, Spain.
Jose D PosadaDepartment of Medicine, School of Medicine, Stanford University, Redwood City, CA, USA.
Juan M BandaGeorgia State University, Department of Computer Science, Atlanta, GA, USA.ORCID 0000-0001-8499-824X
Juan P HorcajadaDepartment of Infectious Diseases, Hospital del Mar, Institut Hospital del Mar d'Investigació Mèdica (IMIM), Universitat Autònoma de Barcelona, Universitat Pompeu Fabra, Barcelona, Spain.ORCID 0000-0001-9873-5459
Julianna KohlerUnited States Agency for International Development, Washington, DC, USA.
Karishma ShahBotnar Research Centre, NDORMS, University of Oxford, Oxford, UK.
Karthik NatarajanDepartment of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-9066-9431
Kristine E LynchVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT, USA.
Li LiuBiomedical Big Data Center, Nanfang Hospital, Southern Medical University, Guangzhou, People's Republic of China.ORCID 0000-0002-5265-4159
Lisa M SchillingData Science to Patient Value Program, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Martina RecaldeFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.
Matthew SpotnitzUnviersity of Washington Medicine, Seattle, WA, USA.
Mengchun GongInstitute of Health Management, Southern Medical University, Guangzhou, People's Republic of China.
Michael E MathenyTennessee Valley Healthcare System, Veterans Affairs Medical Center, Nashville, TN, USA.
Neus ValvenyReal-World Evidence, TFS, Barcelona, Spain.ORCID 0000-0003-1105-5018
Nicole G WeiskopfDepartment of Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA.
Nigam ShahDepartment of Medicine, School of Medicine, Stanford University, Redwood City, CA, USA.
Osaid AlserMassachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Paula CasajustReal-World Evidence, TFS, Barcelona, Spain.ORCID 0000-0003-2733-5436
Rae Woong ParkDepartment of Biomedical Sciences, Ajou University Graduate School of Medicine, Suwon, South Korea.
Robert SchuffDepartment of Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, OR, USA.
Sarah SeagerIQVIA, Cambridge, MA, USA.
Scott L DuVallVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, UT, USA.ORCID 0000-0002-4898-3865
Seng Chan YouDepartment of Preventive Medicine, Yonsei University College of Medicine, Seoul, South Korea.
Seokyoung SongDepartment of Anesthesiology and Pain Medicine, Catholic University of Daegu, School of Medicine, Daegu, South Korea.ORCID 0000-0002-5653-7005
Sergio Fernández-BertolínFundació Institut Universitari per a la recerca a l'Atenció Primària de Salut Jordi Gol i Gurina (IDIAPJGol), Barcelona, Spain.
Stephen FortinJanssen Research & Development, Titusville, NJ, USA.
Tanja MagocUniversity of Florida Health, Gainesville, FL, USA.ORCID 0000-0001-8213-2266
Thomas FalconerDepartment of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0001-6904-1394
Vignesh SubbianCollege of Engineering, The University of Arizona, Tucson, AZ, USA.
Vojtech HuserNational Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Waheed-Ul-Rahman AhmedBotnar Research Centre, NDORMS, University of Oxford, Oxford, UK.ORCID 0000-0003-0880-0355
William CarterData Science to Patient Value Program, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.ORCID 0000-0001-5346-3453
Yin GuanDHC Technologies Co. Ltd., Beijing, People's Republic of China.
Yankuic GalvanUniversity of Florida Health, Gainesville, FL, USA.
Xing HeUniversity of Florida Health, Gainesville, FL, USA.
Peter R RijnbeekDepartment of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands.
George HripcsakDepartment of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, USA.
Patrick B RyanJanssen Research & Development, Titusville, NJ, USA.
Marc A SuchardDepartments of Biostatistics, Computational Medicine, and Human Genetics, University of California, Los Angeles, CA, USA.ORCID 0000-0001-9818-479X
Daniel Prieto-AlhambraCentre for Statistics in Medicine, NDORMS, University of Oxford, Oxford, UK.ORCID 0000-0002-3950-6346

Funding

Oregon Clinical and Translational Research Institute - The National COVID Cohort Collaborative (N3C)UL1TR002369 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Cynthia D Morris, Christopher G. Slatore · 2017 to 2026
$78.4M
DISCOVERING AND APPLYING KNOWLEDGE IN CLINICAL DATABASESR01LM006910 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HRIPCSAK, GEORGE M · 2000 to 2023
$10.6M
NCATS NIH HHS UL1 TR002369NLM NIH HHS R01 LM006910
6 · The paper itself

Abstract

Purpose: Routinely collected real world data (RWD) have great utility in aiding the novel coronavirus disease (COVID-19) pandemic response. Here we present the international Observational Health Data Sciences and Informatics (OHDSI) Characterizing Health Associated Risks and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) framework for standardisation and analysis of COVID-19 RWD. Patients and Methods: We conducted a descriptive retrospective database study using a federated network of data partners in the United States, Europe (the Netherlands, Spain, the UK, Germany, France and Italy) and Asia (South Korea and China). The study protocol and analytical package were released on 11th June 2020 and are iteratively updated via GitHub. We identified three non-mutually exclusive cohorts of 4,537,153 individuals with a clinical Results: We aggregated over 22,000 unique characteristics describing patients with COVID-19. All comorbidities, symptoms, medications, and outcomes are described by cohort in aggregate counts and are readily available online. Globally, we observed similarities in the USA and Europe: more women diagnosed than men but more men hospitalized than women, most diagnosed cases between 25 and 60 years of age versus most hospitalized cases between 60 and 80 years of age. South Korea differed with more women than men hospitalized. Common comorbidities included type 2 diabetes, hypertension, chronic kidney disease and heart disease. Common presenting symptoms were dyspnea, cough and fever. Symptom data availability was more common in hospitalized cohorts than diagnosed. Conclusion: We constructed a global, multi-centre view to describe trends in COVID-19 progression, management and evolution over time. By characterising baseline variability in patients and geography, our work provides critical context that may otherwise be misconstrued as data quality issues. This is important as we perform studies on adverse events of special interest in COVID-19 vaccine surveillance.

Indexed as

descriptive epidemiologyOHDSIOMOP CDMopen sciencereal world datareal world evidence

Identifiers

PMID35345821
PMCPMC8957305

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.