Evidence map›Paper›PMID 35345453›Full record

ArticleiScience2022

Single-cell temporal analysis of natural dengue infection reveals skin-homing lymphocyte expansion one day before defervescence.

Jantarika Kumar Arora, Anunya Opasawatchai, Tiraput Poonpanichakul, Natnicha Jiravejchakul, Waradon Sungnak, DENFREE Thailand, Oranart Matangkasombut, Sarah A Teichmann, Ponpan Matangkasombut, Varodom Charoensawan

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 23 citations in OpenAlex.

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  15. Unraveling flavivirus pathogenesis: from bulk to single-cell RNA-sequencing strategies.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jantarika Kumar AroraDoctor of Philosophy Program in Biochemistry (International Program), Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Anunya OpasawatchaiDepartment of Oral Microbiology, Faculty of Dentistry, Mahidol University, Bangkok 10400, Thailand.
Tiraput PoonpanichakulDepartment of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Natnicha JiravejchakulDepartment of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Waradon SungnakIntegrative Computational Bioscience (ICBS) Center, Mahidol University, Nakorn Pathom 73170, Thailand.
DENFREE Thailand
Oranart MatangkasombutDepartment of Microbiology and Center of Excellence on Oral Microbiology and Immunology, Faculty of Dentistry, Chulalongkorn University, Bangkok 10330, Thailand.
Sarah A TeichmannWellcome Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Ponpan MatangkasombutDepartment of Microbiology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Varodom CharoensawanDepartment of Biochemistry, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
Mahidol University · THChulalongkorn University · THWellcome Sanger Institute · GB

Funding

Medical Research Council MR/R020868/1Wellcome Trust
6 · The paper itself

Abstract

Effective clinical management of acute dengue virus (DENV) infection relies on the timing of suitable treatments during the disease progression. We analyzed single-cell transcriptomic profiles of the peripheral blood mononuclear cell samples from two DENV patients, collected daily during acute phase and also at convalescence. Key immune cell types demonstrated different dynamic responses over the course of the infection. On the day before defervescence (Day -1), we observed the peak expression of several prominent genes in the adaptive immunological pathways. We also characterized unique effector T cell clusters that expressed skin-homing signature genes at Day -1, whereas upregulation of skin and gut homing genes was also observed in plasma cells and plasmablasts during the febrile period. This work provides an overview of unique molecular dynamics that signify the entry of the critical phase, and the findings could improve the patient management of DENV infection.

Indexed as

ImmunologySingle-cell OmicsSystems biology

Identifiers

PMID35345453
PMCPMC8957021
OpenAlexW4220839658

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.