Evidence map›Paper›PMID 35344442›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Protein cost minimization promotes the emergence of coenzyme redundancy.

Joshua E Goldford, Ashish B George, Avi I Flamholz, Daniel Segrè

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Revealing the Mechanisms of Enhanced β-Farnesene Production inInternational journal of molecular sciences · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Insertions and deletions mediated functional divergence of Rossmann fold enzymes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Joshua E GoldfordPhysics of Living Systems, Massachusetts Institute of Technology, Cambridge, MA 02139.ORCID 0000-0001-7315-8018
Ashish B GeorgeDepartment of Physics, Boston University, Boston, MA, 02215.ORCID 0000-0002-6923-3596
Avi I FlamholzDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA.ORCID 0000-0002-9278-5479
Daniel SegrèBioinformatics Program, Biological Design Center, Boston University, Boston, MA, 02215.ORCID 0000-0003-4859-1914
Boston University · USRutgers, The State University of New Jersey · US

Funding

Identifying protective omics profiles in centenarians and translating these into preventive and therapeutic strategiesUH2AG064704 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI PERLS, THOMAS T, SEBASTIANI, PAOLA · 2019 to 2021
$9.4M
NIA NIH HHS UH2 AG064704
6 · The paper itself

Abstract

SignificanceMetabolism relies on a small class of molecules (coenzymes) that serve as universal donors and acceptors of key chemical groups and electrons. Although metabolic networks crucially depend on structurally redundant coenzymes [e.g., NAD(H) and NADP(H)] associated with different enzymes, the criteria that led to the emergence of this redundancy remain poorly understood. Our combination of modeling and structural and sequence analysis indicates that coenzyme redundancy may not be essential for metabolism but could rather constitute an evolved strategy promoting efficient usage of enzymes when biochemical reactions are near equilibrium. Our work suggests that early metabolism may have operated with fewer coenzymes and that adaptation for metabolic efficiency may have driven the rise of coenzyme diversity in living systems.

Indexed as

CoenzymesNADNADPCoenzymesNADNADPcoenzymesconstraint-based modelingevolutionmetabolism

Identifiers

PMID35344442
PMCPMC9168515
OpenAlexW4220787162

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.