Evidence map›Paper›PMID 35343765›Full record

ArticleJournal of virology2022

Structural Basis for Human Receptor Recognition by SARS-CoV-2 Omicron Variant BA.1.

Qibin Geng, Ke Shi, Gang Ye, Wei Zhang, Hideki Aihara, Fang Li

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 69 citations in OpenAlex.

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  17. Structural basis for mouse receptor recognition by bat SARS2-like coronaviruses.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Qibin Geng *Department of Veterinary and Biomedical Sciences, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Ke Shi *Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Gang YeDepartment of Veterinary and Biomedical Sciences, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Wei ZhangDepartment of Veterinary and Biomedical Sciences, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Hideki AiharaDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesotagrid.17635.36, Minneapolis, Minnesota, USA.
Fang LiDepartment of Veterinary and Biomedical Sciences, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.ORCID 0000-0002-1958-366X
University of Minnesota · US

Funding

Mechanisms of MERS-CoV Entry, Cross-species Transmission and PathogenesisR01AI110700 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, LI, FANG · 2015 to 2024
$7.4M
Structural studies of viral replication and invasionR35GM118047 · NIGMS · UNIVERSITY OF MINNESOTA · PI Hideki Aihara · 2016 to 2026
$6.3M
Receptor recognition mechanisms of coronavirusesR01AI089728 · NIAID · UNIVERSITY OF MINNESOTA · PI Fang Li, Timothy Patrick Sheahan · 2010 to 2026
$4.7M
Biacore T200 surface plasmon resonance instrumentS10OD021539 · OD · UNIVERSITY OF MINNESOTA · PI HAWKINSON, JON E · 2016 to 2016
$344k
NIAID NIH HHS R01 AI089728NIAID NIH HHS R01 AI110700NIGMS NIH HHS R35 GM118047NIH HHS S10 OD021539
6 · The paper itself

Abstract

The highly contagious and fast-spreading omicron variant of SARS-CoV-2 infects the respiratory tracts efficiently. The receptor-binding domain (RBD) of the omicron spike protein recognizes human angiotensin-converting enzyme 2 (ACE2) as its receptor and plays a critical role in the tissue tropism of SARS-CoV-2. Here, we showed that the omicron RBD (strain BA.1) binds to ACE2 more strongly than does the prototypic RBD from the original Wuhan strain. We also measured how individual omicron mutations affect ACE2 binding. We further determined the crystal structure of the omicron RBD (engineered to facilitate crystallization) complexed with ACE2 at 2.6 Å. The structure shows that omicron mutations caused significant structural rearrangements of two mutational hot spots at the RBD/ACE2 interface, elucidating how each omicron mutation affects ACE2 binding. The enhanced ACE2 binding by the omicron RBD may facilitate the omicron variant's infection of the respiratory tracts where ACE2 expression level is low. Our study provides insights into the receptor recognition and tissue tropism of the omicron variant.

Indexed as

Angiotensin-Converting Enzyme 2COVID-19HumansMutationProtein BindingProtein Structure, TertiarySARS-CoV-2Spike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2Spike Glycoprotein, Coronavirusspike protein, SARS-CoV-2angiotensin-converting enzyme 2COVID-19mutational hotspotsomicron variantreceptor-binding domain (RBD)receptor-binding motif (RBM)X-ray crystallography

Identifiers

PMID35343765
PMCPMC9044962
OpenAlexW4220851163

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.