Evidence map›Paper›PMID 35341855›Full record

ArticleThe Science of the total environment2022

A regression-based QSAR-model to predict acute toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica): Calibration, validation, and future developments to support risk assessment of chemicals in amphibians.

Andrey A Toropov, Matteo R Di Nicola, Alla P Toropova, Alessandra Roncaglioni, Edoardo Carnesecchi, Nynke I Kramer, Antony J Williams, Manuel E Ortiz-Santaliestra, Emilio Benfenati, Jean-Lou C M Dorne

Abstract read
In one paragraph

Article in The Science of the total environment, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Andrey A ToropovIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy. Electronic address: andrey.toropov@marionegri.it.
Matteo R Di NicolaUnit of Dermatology and Cosmetology, IRCCS San Raffaele Hospital, Via Olgettina 60, 20132 Milan, Italy; Toxicology Division, Wageningen University, PO Box 8000, 6700 EA Wageningen, the Netherlands. Electronic address: dinicola.matteo@hsr.it.
Alla P ToropovaIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy. Electronic address: alla.toropova@marionegri.it.
Alessandra RoncaglioniIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy. Electronic address: alessandra.roncaglioni@marionegri.it.
Edoardo CarnesecchiInstitute of Risk Assessment, Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Evidence Management Unit, European Food Safety Authority (EFSA), Via Carlo Magno 1A, 43126 Parma, Italy. Electronic address: edoardo.carnesecchi@efsa.europa.eu.
Nynke I KramerToxicology Division, Wageningen University, PO Box 8000, 6700 EA Wageningen, the Netherlands; Institute of Risk Assessment, Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands. Electronic address: nynke.kramer@wur.nl.
Antony J WilliamsCenter for Computational Toxicology and Exposure, Office of Research and Development, U.S. Environmental Protection Agency (U.S. EPA), Research Triangle Park, Durham, USA. Electronic address: williams.antony@epa.gov.
Manuel E Ortiz-SantaliestraInstituto de Investigación en Recursos Cinegéticos (IREC) UCLM-CSIC-JCCM, Ronda de Toledo 12, 13005 Ciudad Real, Spain. Electronic address: manuele.ortiz@uclm.es.
Emilio BenfenatiIstituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milano, Italy. Electronic address: emilio.benfenati@marionegri.it.
Jean-Lou C M DorneMethodology and Scientific Support Unit, European Food Safety Authority (EFSA), Via Carlo Magno 1A, 43126 Parma, Italy. Electronic address: jean-lou.dorne@efsa.europa.eu.

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Amphibian populations are undergoing a global decline worldwide. Such decline has been attributed to their unique physiology, ecology, and exposure to multiple stressors including chemicals, temperature, and biological hazards such as fungi of the Batrachochytrium genus, viruses such as Ranavirus, and habitat reduction. There are limited toxicity data for chemicals available for amphibians and few quantitative structure-activity relationship (QSAR) models have been developed and are publicly available. Such QSARs provide important tools to assess the toxicity of chemicals particularly in a data poor context. QSARs provide important tools to assess the toxicity of chemicals particularly when no toxicological data are available. This manuscript provides a description and validation of a regression-based QSAR model to predict, in a quantitative manner, acute lethal toxicity of aromatic chemicals in tadpoles of the Japanese brown frog (Rana japonica). QSAR models for acute median lethal molar concentrations (LC50-12 h) of waterborne chemicals using the Monte Carlo method were developed. The statistical characteristics of the QSARs were described as average values obtained from five random distributions into training and validation sets. Predictions from the model gave satisfactory results for the overall training set (R

Indexed as

Quantitative Structure-Activity RelationshipRanidaeAnimalsCalibrationLarvaRisk AssessmentAcute toxicityIndex of ideality of correlationMonte Carlo methodQSARRana japonica tadpole

Identifiers

PMID35341855
PMCPMC9535814

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.