Evidence map›Paper›PMID 35339563›Full record

ArticleJournal of molecular biology2022

MptpA Kinetics Enhanced by Allosteric Control of an Active Conformation.

Federica Maschietto, Erik Zavala, Brandon Allen, J Patrick Loria, Victor Batista

Abstract read
In one paragraph

Article in Journal of molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Shikonin and Juglone InhibitBiotech (Basel (Switzerland)) · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Federica MaschiettoDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520, United States.
Erik ZavalaDepartment of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520, United States.
Brandon AllenDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520, United States.
J Patrick LoriaDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520, United States; Department of Molecular Biophysics and Biochemistry, Yale University, 266 Whitney Avenue, New Haven, CT 06520, United States. Electronic address: patrick.loria@yale.edu.
Victor BatistaDepartment of Chemistry, Yale University, 225 Prospect Street, New Haven, CT 06520, United States. Electronic address: victor.batista@yale.edu.

Funding

Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
Predoctoral Program in BiophysicsT32GM149438 · NIGMS · YALE UNIVERSITY · PI Yong Xiong, Elsa Chui Ying Yan · 2023 to 2026
$2.6M
Computational and Biochemical Studies of Temperature Effects on Allostery in the Imidazole Glycerol Phosphate Synthase (IGPS) from T. maritimaR01GM106121 · NIGMS · YALE UNIVERSITY · PI BATISTA, VICTOR S, LORIA, JOSEPH P · 2014 to 2021
$2.3M
NIGMS NIH HHS R01 GM106121NIGMS NIH HHS R01 GM112781NIGMS NIH HHS T32 GM149438
6 · The paper itself

Abstract

Understanding allostery in the Mycobacterium tuberculosis low molecular weight protein tyrosine phosphatase (MptpA) is a subject of great interest since MptpA is one of two protein tyrosine phosphatases (PTPs) from the pathogenic organism Mycobacterium tuberculosis expressed during host cell infection. Here, we combine computational modeling with solution NMR spectroscopy and we find that Q75 is an allosteric site. Removal of the polar side chain of Q75 by mutation to leucine results in a cascade of events that reposition the acid loop over the active site and relocates the catalytic aspartic acid (D126) at an optimal position for proton donation to the leaving aryl group of the substrate and for subsequent hydrolysis of the thiophosphoryl intermediate. The computational analysis is consistent with kinetic data, and NMR spectroscopy, showing that the Q75L mutant exhibits enhanced reaction kinetics with similar substrate binding affinity. We anticipate that our findings will motivate further studies on the possibility that MptpA remains passivated during the chronic state of infection and increases its activity as part of the pathogenic life cycle of M. tuberculosis possibly via allosteric means.

Indexed as

Bacterial ProteinsMycobacterium tuberculosisProtein Tyrosine PhosphatasesAllosteric RegulationCatalytic DomainKineticsBacterial ProteinsMptpA protein, Mycobacterium tuberculosisProtein Tyrosine Phosphatasesallosteryenzymesmolecular dynamicsNMR spectroscopytuberculosis

Identifiers

PMID35339563
PMCPMC10623291

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.