Evidence map›Paper›PMID 35338774›Full record

ArticleBlood2022

Functional mapping of PHF6 complexes in chromatin remodeling, replication dynamics, and DNA repair.

Silvia Alvarez, Ana C da Silva Almeida, Robert Albero, Mayukh Biswas, Angelica Barreto-Galvez, Thomas S Gunning, Anam Shaikh, Tomas Aparicio, Agnieszka Wendorff, Erich Piovan and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. PHF6 suppresses self-renewal of leukemic stem cells in AML.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Silvia AlvarezInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0003-0664-650X
Ana C da Silva AlmeidaInstitute for Cancer Genetics, Columbia University, New York, NY.
Robert AlberoInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0001-5527-0997
Mayukh BiswasInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0003-1670-8161
Angelica Barreto-GalvezRutgers Cancer Institute of New Jersey, New Brunswick, NJ.ORCID 0000-0002-3731-6741
Thomas S GunningInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0001-8116-8136
Anam ShaikhRutgers Cancer Institute of New Jersey, New Brunswick, NJ.
Tomas AparicioInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0001-5492-4733
Agnieszka WendorffInstitute for Cancer Genetics, Columbia University, New York, NY.
Erich PiovanUOC Immunologia e Diagnostica Molecolare Oncologica, Istituto Oncologico Veneto-Istituto Di Ricovero e Cura a Carattere Scientifico (IRCCS), Padova, Italy.
Pieter Van VlierbergheDepartment of Biomolecular Medicine, Ghent University, Ghent, Belgium.
Steven GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA.
Jean GautierInstitute for Cancer Genetics, Columbia University, New York, NY.ORCID 0000-0002-6348-6023
Advaitha MadireddyRutgers Cancer Institute of New Jersey, New Brunswick, NJ.ORCID 0000-0002-4730-5325
Adolfo A FerrandoInstitute for Cancer Genetics, Columbia University, New York, NY.
Cancer Genetics (United States) · USRutgers, The State University of New Jersey · USColumbia University Irving Medical Center · USGhent University · BEHarvard University · USUniversity of Padua · IT

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
DNA Repair and Genomic Instability in Cancer Development and TherapyR35CA197606 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAUTIER, JEAN · 2015 to 2021
$5.7M
Molecular pathways and targeted therapies in human leukemiaR35CA210065 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FERRANDO, ADOLFO A. · 2017 to 2021
$4.7M
The role of PHF6 in the control of hematopoietic stem cell aging.R01AG077020 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PALOMERO, TERESA, RABADAN, RAUL · 2021 to 2025
$2.5M
The role of PHF6 in T-cell acute lymphoblastic leukemiaR01CA155743 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FERRANDO, ADOLFO A. · 2011 to 2015
$1.6M
Multiscale proteomics studies of DNA repair and genomic stabilityR50CA233182 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI APARICIO CASADO, TOMAS · 2018 to 2022
$812k
NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA155743NCI NIH HHS R35 CA197606NCI NIH HHS R35 CA210065NCI NIH HHS R50 CA233182NIA NIH HHS R01 AG077020
6 · The paper itself

Abstract

The Plant Homeodomain 6 gene (PHF6) encodes a nucleolar and chromatin-associated leukemia tumor suppressor with proposed roles in transcription regulation. However, specific molecular mechanisms controlled by PHF6 remain rudimentarily understood. Here we show that PHF6 engages multiple nucleosome remodeling protein complexes, including nucleosome remodeling and deacetylase, SWI/SNF and ISWI factors, the replication machinery and DNA repair proteins. Moreover, after DNA damage, PHF6 localizes to sites of DNA injury, and its loss impairs the resolution of DNA breaks, with consequent accumulation of single- and double-strand DNA lesions. Native chromatin immunoprecipitation sequencing analyses show that PHF6 specifically associates with difficult-to-replicate heterochromatin at satellite DNA regions enriched in histone H3 lysine 9 trimethyl marks, and single-molecule locus-specific analyses identify PHF6 as an important regulator of genomic stability at fragile sites. These results extend our understanding of the molecular mechanisms controlling hematopoietic stem cell homeostasis and leukemia transformation by placing PHF6 at the crossroads of chromatin remodeling, replicative fork dynamics, and DNA repair.

Indexed as

Chromatin Assembly and DisassemblyLeukemiaChromatinDNA RepairHumansNucleosomesRepressor ProteinsChromatinNucleosomesPHF6 protein, humanRepressor Proteins

Identifiers

PMID35338774
PMCPMC9185155
OpenAlexW4220847008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.