Evidence map›Paper›PMID 35338148›Full record

ArticleNature communications2022

Comprehensive characterization of PTEN mutational profile in a series of 34,129 colorectal cancers.

Ilya G Serebriiskii, Valery Pavlov, Rossella Tricarico, Grigorii Andrianov, Emmanuelle Nicolas, Mitchell I Parker, Justin Newberg, Garrett Frampton, Joshua E Meyer, Erica A Golemis

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 48 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. PTEN status, tumor immune microenvironment, and survival in colorectal cancer.Virchows Archiv : an international journal of pathology · 2026
    Article
  5. Article
  6. Article
  7. Phenotype-Specific Recalibration of MAVE Data Enables Repurposing ofmedRxiv : the preprint server for health sciences · 2026
    Article
  8. miR-424(322)Cell death & disease · 2026
    Article
  9. Review
  10. Prevalence and clinical impact ofFrontiers in oncology · 2026
    Article
  11. Article
  12. Is PTEN rs397510595 an Unexpected Guardian in Canine Mammary Neoplasia?International journal of molecular sciences · 2025
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Ilya G SerebriiskiiProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. Ilya.Serebriiskii@fccc.edu.ORCID http://orcid.org/0000-0003-0470-9490
Valery PavlovKazan Federal University, Russian Federation, 420000, Kazan, Russia.
Rossella TricaricoProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Grigorii AndrianovProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Emmanuelle NicolasProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Mitchell I ParkerProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.
Justin NewbergFoundation Medicine Inc, 150 Second St., Cambridge, MA, 02141, USA.
Garrett FramptonFoundation Medicine Inc, 150 Second St., Cambridge, MA, 02141, USA.ORCID http://orcid.org/0000-0002-2361-2750
Joshua E MeyerProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA.ORCID http://orcid.org/0000-0002-7585-5738
Erica A GolemisProgram in Molecular Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, 19111, USA. Erica.Golemis@fccc.edu.ORCID http://orcid.org/0000-0003-3618-3673
Fox Chase Cancer Center · USFoundation Medicine (United States)Moscow Institute of Physics and Technology · RU

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
Interaction of protein-targeted therapeutics and ciliary dynamicsR01DK108195 · NIDDK · RESEARCH INST OF FOX CHASE CAN CTR · PI GOLEMIS, ERICA A. · 2016 to 2020
$2.0M
Creating a Unified RAS Structural Nomenclature to Compare the Impact of Oncogenic Mutations on KRAS, NRAS, and HRASF30GM142263 · NIGMS · DREXEL UNIVERSITY · PI PARKER, MITCHELL ISAAC · 2021 to 2024
$191k
Comprehensive identification of RAS mutations and allelic co-segregation patterns in colorectal cancerR03CA256234 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI SEREBRIISKII, ILYA · 2021 to 2022
$187k
NCI NIH HHS P30 CA006927NCI NIH HHS R03 CA256234NIDDK NIH HHS R01 DK108195NIGMS NIH HHS F30 GM142263
6 · The paper itself

Abstract

Loss of expression or activity of the tumor suppressor PTEN acts similarly to an activating mutation in the oncogene PIK3CA in elevating intracellular levels of phosphatidylinositol (3,4,5)-trisphosphate (PIP3), inducing signaling by AKT and other pro-tumorigenic signaling proteins. Here, we analyze sequence data for 34,129 colorectal cancer (CRC) patients, capturing 3,434 PTEN mutations. We identify specific patterns of PTEN mutation associated with microsatellite stability/instability (MSS/MSI), tumor mutational burden (TMB), patient age, and tumor location. Within groups separated by MSS/MSI status, this identifies distinct profiles of nucleotide hotspots, and suggests differing profiles of protein-damaging effects of mutations. Moreover, discrete categories of PTEN mutations display non-identical patterns of co-occurrence with mutations in other genes important in CRC pathogenesis, including KRAS, APC, TP53, and PIK3CA. These data provide context for clinical targeting of proteins upstream and downstream of PTEN in distinct CRC cohorts.

Indexed as

Colorectal NeoplasmsPTEN PhosphohydrolaseClass I Phosphatidylinositol 3-KinasesDNA Mutational AnalysisHumansMicrosatellite InstabilityMutationPhosphatidylinositol 3-KinasesClass I Phosphatidylinositol 3-KinasesPhosphatidylinositol 3-KinasesPTEN PhosphohydrolasePTEN protein, human

Identifiers

PMID35338148
PMCPMC8956741
OpenAlexW4220795405

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.