ArticleBiology2022
Comparative Analysis and Phylogenetic Relationships of
Article in Biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 18 citations in OpenAlex.
- Strong phylogenetic signal from chloroplast genomes of three Barringtonia species provides the first genomic resources for their conservation.BMC plant biology · 2026Article
- The complete chloroplast genomes of four Aspidopterys species and a comparison with other Malpighiaceae species.Scientific reports · 2025Article
- Comparative Chloroplast Genomes and Phylogenetic Relationships of True Mangrove SpeciesCurrent issues in molecular biology · 2025Article
- Assembly and analysis of the complete mitochondrial and chloroplast genomes of Vigna reflexo-pilosa.PloS one · 2025Article
- Comparative Plastome Analysis Between Endangered Mangrove SpeciesEcology and evolution · 2024Article
- Complete chloroplast genomes of six neotropical palm species, structural comparison, and evolutionary dynamic patterns.Scientific reports · 2023Article
- The complete chloroplast genome of Ulmus mianzhuensis with insights into structural variations, adaptive evolution, and phylogenetic relationships of Ulmus (Ulmaceae).BMC genomics · 2023Article
- Species richness, extent and potential threats to mangroves of Sarangani Bay Protected Seascape, Philippines.Biodiversity data journal · 2023Article
- The characteristics of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2023Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2023Article
- Chromosome-level genome assembly of Indian mangrove (Ceriops tagal) revealed a genome-wide duplication event predating the divergence of Rhizophoraceae mangrove species.The plant genome · 2022Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
- Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
Corrections and comments
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
Ceriops and Avicennia are true mangroves in the middle and seaward zones of mangrove forests, respectively. The chloroplast genomes of Ceriops decandra, Ceriops zippeliana, and Ceriops tagal were assembled into lengths of 166,650, 166,083 and 164,432 bp, respectively, whereas Avicennia lanata was 148,264 bp in length. The gene content and gene order are highly conserved among these species. The chloroplast genome contains 125 genes in A. lanata and 129 genes in Ceriops species. Three duplicate genes (rpl2, rpl23, and trnM-CAU) were found in the IR regions of the three Ceriops species, resulting in expansion of the IR regions. The rpl32 gene was lost in C. zippeliana, whereas the infA gene was present in A. lanata. Short repeats (<40 bp) and a lower number of SSRs were found in A. lanata but not in Ceriops species. The phylogenetic analysis supports that all Ceriops species are clustered in Rhizophoraceae and A. lanata is in Acanthaceae. In a search for genes under selective pressures of coastal environments, the rps7 gene was under positive selection compared with non-mangrove species. Finally, two specific primer sets were developed for species identification of the three Ceriops species. Thus, this finding provides insightful genetic information for evolutionary relationships and molecular markers in Ceriops and Avicennia species.
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