Evidence map›Paper›PMID 35334059›Full record

ArticleBiochemical genetics2022

The Analyses of Cetacean Virus-Responsive Genes Reveal Evolutionary Marks in Mucosal Immunity-Associated Genes.

Oksung Chung, Ye-Eun Jung, Kyeong Won Lee, Young Jun An, Jungeun Kim, Yoo-Rim Roh, Jong Bhak, Kiejung Park, Jessica A Weber, Jaehun Cheong and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemical genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Oksung ChungClinomics, Ulsan, 44919, Republic of Korea.
Ye-Eun JungDepartment of Chemistry and Nanoscience, Ewha Womans University, Seoul, 03760, Republic of Korea.
Kyeong Won LeeMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Busan, 49111, Republic of Korea.
Young Jun AnMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Busan, 49111, Republic of Korea.
Jungeun KimPersonal Genomics Institute, Genome Research Foundation, Cheongju, 28160, Republic of Korea.
Yoo-Rim RohMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Busan, 49111, Republic of Korea.
Jong BhakClinomics, Ulsan, 44919, Republic of Korea.
Kiejung ParkSangmyung University, Cheonan, 31066, Republic of Korea.
Jessica A WeberDepartment of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.
Jaehun CheongDepartment of Molecular Biology, Pusan National University, Busan, 46241, Republic of Korea.
Sun-Shin ChaDepartment of Chemistry and Nanoscience, Ewha Womans University, Seoul, 03760, Republic of Korea.
Jung-Hyun LeeMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Busan, 49111, Republic of Korea. jlee@kiost.ac.kr.
Hyung-Soon YimMarine Biotechnology Research Center, Korea Institute of Ocean Science and Technology, 385 Haeyang-ro, Busan, 49111, Republic of Korea. yimh@kiost.ac.kr.ORCID http://orcid.org/0000-0002-4820-856X
Korea Institute of Ocean Science and Technology · KREwha Womans University · KRGenome Research Foundation · KRPusan National University · KRSangmyung University · KRUniversity of New Mexico · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses are the most common and abundant organisms in the marine environment. To better understand how cetaceans have adapted to this virus-rich environment, we compared cetacean virus-responsive genes to those from terrestrial mammals. We identified virus-responsive gene sequences in seven species of cetaceans, which we compared with orthologous sequences in seven terrestrial mammals. As a result of evolution analysis using the branch model and the branch-site model, 21 genes were selected using at least one model. IFN-ε, an antiviral cytokine expressed at mucous membranes, and its receptor IFNAR1 contain cetacean-specific amino acid substitutions that might change the interaction between the two proteins and lead to regulation of the immune system against viruses. Cetacean-specific amino acid substitutions in IL-6, IL-27, and the signal transducer and activator of transcription (STAT)1 are also predicted to alter the mucosal immune response of cetaceans. Since mucosal membranes are the first line of defense against the external environment and are involved in immune tolerance, our analysis of cetacean virus-responsive genes suggests that genes with cetacean-specific mutations in mucosal immunity-related genes play an important role in the protection and/or regulation of immune responses against viruses.

Indexed as

CetaceaImmunity, MucosalAdaptation, PhysiologicalAnimalsMammalsPhylogenyCetaceanInterferon εMucosal immunityPSGResponse to virus

Identifiers

PMID35334059
PMCPMC8949644
OpenAlexW4221129464

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.