Evidence map›Paper›PMID 35332784›Full record

ArticleApplied spectroscopy2022

Colon Cancer Grading Using Infrared Spectroscopic Imaging-Based Deep Learning.

Saumya Tiwari, Kianoush Falahkheirkhah, Georgina Cheng, Rohit Bhargava

Open access · greenAbstract read
In one paragraph

Article in Applied spectroscopy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 2 pooled it
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 2 syntheses or guidelines pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Saumya TiwariDepartment of Medicine, 8784University of California San Diego, San Diego, CA, USA.ORCID https://orcid.org/0000-0001-5148-6539
Kianoush FalahkheirkhahDepartment of Chemical and Biomolecular Engineering and Chemistry and Beckman Institute for Advanced Science and Technology, 124331University of Illinois at Urbana-Champaign, Urbana, IL, USA.ORCID https://orcid.org/0000-0003-2781-2693
Georgina Cheng8100Carle Foundation Hospital (Carle Health), Urbana, IL, USA.
Rohit BhargavaCancer Center at Illinois, 124331University of Illinois at Urbana-Champaign, Urbana, IL, USA.ORCID https://orcid.org/0000-0001-7360-994X
University of Illinois Urbana-Champaign · USCarle Foundation Hospital · USUniversity of California San Diego · US

Funding

Real time colon histopathology by infrared spectroscopic imagingR01CA260830 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT · 2021 to 2025
$2.3M
NCI NIH HHS R01 CA260830
6 · The paper itself

Abstract

Tumor grade assessment is critical to the treatment of cancers. A pathologist typically evaluates grade by examining morphologic organization in tissue using hematoxylin and eosin (H&E) stained tissue sections. Fourier transform infrared spectroscopic (FT-IR) imaging provides an alternate view of tissue in which spatially specific molecular information from unstained tissue can be utilized. Here, we examine the potential of IR imaging for grading colon cancer in biopsy samples. We used a 148-patient cohort to develop a deep learning classifier to estimate the tumor grade using IR absorption. We demonstrate that FT-IR imaging can be a viable tool to determine colorectal cancer grades, which we validated on an independent cohort of surgical resections. This work demonstrates that harnessing molecular information from FT-IR imaging and coupling it with morphometry is a potential path to develop clinically relevant grade prediction models.

Indexed as

Colonic NeoplasmsDeep LearningHumansSpectrophotometry, InfraredSpectroscopy, Fourier Transform Infraredautomated gradingcolon gradecolorectal cancerdeep learningdigital pathologyFourier transform infrared spectroscopic imagingFT-IRmachine learning

Identifiers

PMID35332784
PMCPMC9202565
OpenAlexW4220703792

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.