Evidence map›Paper›PMID 35331141›Full record

ArticleBMC plant biology2022

Defense response changes in roots of oil palm (Elaeis guineensis Jacq.) seedlings after internal symptoms of Ganoderma boninense Pat. infection.

Rokhana Faizah, Riza Arief Putranto, Vivi Restu Raharti, Nanang Supena, Dewi Sukma, Asmini Budiani, Sri Wening, Sudarsono Sudarsono

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024
    Review
  4. An In-Depth Study of PhytopathogenicJournal of fungi (Basel, Switzerland) · 2024
    Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Rokhana FaizahPlant Breeding and Biotechnology Study Program, Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University (IPB University), Jl. Meranti, Dramaga Campus, Bogor, 16680, Indonesia. rokhanafaizah@gmail.com.
Riza Arief PutrantoIndonesian Research Institute for Biotechnology and Bioindustry, Jl. Taman Kencana No. 1, Bogor, 16128, Indonesia.
Vivi Restu RahartiDepartment of Agrotechnology, Agriculture Faculty, Jenderal Soedirman University, Jl. Dr. Soeparno No. 63, Karangwangkal, North Purwokerto, Central Java, 53122, Indonesia.
Nanang SupenaIndonesian Oil Palm Research Institute, Jl. Brigjen Katamso No. 51, Medan, North Sumatera, 20158, Indonesia.
Dewi SukmaPlant Breeding and Biotechnology Study Program, Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University (IPB University), Jl. Meranti, Dramaga Campus, Bogor, 16680, Indonesia.
Asmini BudianiIndonesian Research Institute for Biotechnology and Bioindustry, Jl. Taman Kencana No. 1, Bogor, 16128, Indonesia.
Sri WeningIndonesian Oil Palm Research Institute, Jl. Brigjen Katamso No. 51, Medan, North Sumatera, 20158, Indonesia.
Sudarsono SudarsonoPlant Breeding and Biotechnology Study Program, Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University (IPB University), Jl. Meranti, Dramaga Campus, Bogor, 16680, Indonesia.
IPB University · IDPalm Research Center · IDIndonesian Institute of Sciences · IDJenderal Soedirman University · IDUniversitas Dian Nusantara · ID

Funding

The Indonesian Oil Palm Estate Fund PRJ-31/DPKS/2018
6 · The paper itself

Abstract

backgroundThe development of basal stem rot (BSR) disease in oil palm is associated with lignin during vegetative growth and salicylic acid (SA) biosynthesis. The increase in the lignin content, SA accumulation, growth, and root biomass could indicate the resistance of oil palm seedlings to BSR disease. Therefore, although there are many studies on the interactions between the Ganoderma boninense and oil palm, research on evaluation of physiological processes, biochemistry, and molecules occurring during early internal symptoms of BSR in roots of oil palm (Elaeis guineensis Jacq.) are essential.

resultsGanoderma boninense inoculation indicated that C01, C02, and C05 seedlings were susceptible, while the other three seedlings, C03, C07, and C08, were resistant based on Ganoderma Disease Index (GDI). Infection by G. boninense in the most susceptible seedlings C05 reduced fresh weight of roots (FW) by 9.0%, and lignin content by 10.9%. The most resistant seedlings C08 were reduced by only 8.4%, and 0.2% regarding their fresh weight and lignin content, respectively. BSR disease induced SA accumulation in the most susceptible C08 and decreased peroxidase (PRX) enzyme (EC 1.11.1.7) activities in root tissues of oil palm seedlings except C07 and C08 where PRX activities remained high in the 4 months after planting. Infection with G. boninense also increased glutathione S-transferase U19-like (EgGSTU19) gene expression in the root tissues of susceptible seedlings, while laccase-24 (EgLCC24) gene expression was associated with resistance against BSR disease. Based on the relative expression of twelve genes, two genes are categorized as receptors (EgWAKL5, EgMIK1), two genes as biosynthesis signal transduction compound (EgOPR5, EgACO1), five genes as defense responses (EgROMT, EgSOT12, EgLCC24, EgGLT3, EgGSTU19), and one gene as trans-resveratrol di-O-methyltransferase-like (EgRNaseIII) predicted related to BSR infection. While two other genes remain unknown (EgUnk1, EgUnk2).

conclusionsGanoderma infection-induced SA accumulation and lignification in resistant accessions promote the seedlings root biomass. Oil palm seedlings have a synergistic physical, biochemical, and molecular defense mechanism to the BSR disease. The utilization of nucleotide-based molecular markers using EgLCC24 gene is able to detect resistant oil palm seedlings to G. boninense.

Indexed as

ArecaceaeGanodermaPlant DiseasesSeedlingsBasal stem rot diseaseDefense responseLignin of oil palm rootRelative expression genesSalicylic acid; peroxidase enzyme

Identifiers

PMID35331141
PMCPMC8944027
OpenAlexW4220969935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.