Evidence map›Paper›PMID 35328249›Full record

ArticleDiagnostics (Basel, Switzerland)2022

The Role of 3D CT Imaging in the Accurate Diagnosis of Lung Function in Coronavirus Patients.

Ibrahim Shawky Farahat, Ahmed Sharafeldeen, Mohamed Elsharkawy, Ahmed Soliman, Ali Mahmoud, Mohammed Ghazal, Fatma Taher, Maha Bilal, Ahmed Abdel Khalek Abdel Razek, Waleed Aladrousy and 4 more

Abstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Multimodal Diagnostics of Changes in Rat Lungs after Vaping.Diagnostics (Basel, Switzerland) · 2023
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ibrahim Shawky FarahatBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0003-3622-2740
Ahmed SharafeldeenBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0002-6838-8211
Mohamed ElsharkawyBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0001-9242-9709
Ahmed SolimanBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0002-1931-3416
Ali MahmoudBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0003-2557-9699
Mohammed GhazalElectrical, Computer, and Biomedical Engineering Department, College of Engineering, Abu Dhabi University, Abu Dhabi 59911, United Arab Emirates.ORCID 0000-0002-9045-6698
Fatma TaherCollege of Technological Innovation, Zayed University, Dubai 19282, United Arab Emirates.ORCID 0000-0001-8358-9081
Maha BilalDepartment of Diagnostic Radiology, Faculty of Medicine, Mansoura University, Mansoura 35516, Egypt.
Ahmed Abdel Khalek Abdel RazekDepartment of Diagnostic Radiology, Faculty of Medicine, Mansoura University, Mansoura 35516, Egypt.ORCID 0000-0002-9613-5932
Waleed AladrousyComputer Science Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt.ORCID 0000-0002-9215-5469
Samir ElmougyComputer Science Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt.ORCID 0000-0002-0765-5355
Ahmed Elsaid TolbaComputer Science Department, Faculty of Computers and Information, Mansoura University, Mansoura 35516, Egypt.
Moumen El-MelegyDepartment of Electrical Engineering, Assiut University, Assiut 71511, Egypt.ORCID 0000-0003-0146-5515
Ayman El-BazBioImaging Laboratory, Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.ORCID 0000-0001-7264-1323

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Early grading of coronavirus disease 2019 (COVID-19), as well as ventilator support machines, are prime ways to help the world fight this virus and reduce the mortality rate. To reduce the burden on physicians, we developed an automatic Computer-Aided Diagnostic (CAD) system to grade COVID-19 from Computed Tomography (CT) images. This system segments the lung region from chest CT scans using an unsupervised approach based on an appearance model, followed by 3D rotation invariant Markov-Gibbs Random Field (MGRF)-based morphological constraints. This system analyzes the segmented lung and generates precise, analytical imaging markers by estimating the MGRF-based analytical potentials. Three Gibbs energy markers were extracted from each CT scan by tuning the MGRF parameters on each lesion separately. The latter were healthy/mild, moderate, and severe lesions. To represent these markers more reliably, a Cumulative Distribution Function (CDF) was generated, then statistical markers were extracted from it, namely, 10th through 90th CDF percentiles with 10% increments. Subsequently, the three extracted markers were combined together and fed into a backpropagation neural network to make the diagnosis. The developed system was assessed on 76 COVID-19-infected patients using two metrics, namely, accuracy and Kappa. In this paper, the proposed system was trained and tested by three approaches. In the first approach, the MGRF model was trained and tested on the lungs. This approach achieved 95.83% accuracy and 93.39% kappa. In the second approach, we trained the MGRF model on the lesions and tested it on the lungs. This approach achieved 91.67% accuracy and 86.67% kappa. Finally, we trained and tested the MGRF model on lesions. It achieved 100% accuracy and 100% kappa. The results reported in this paper show the ability of the developed system to accurately grade COVID-19 lesions compared to other machine learning classifiers, such as k-Nearest Neighbor (KNN), decision tree, naïve Bayes, and random forest.

Indexed as

Computer Assisted Diagnosis (CAD)COVID-19machine learningMarkov–Gibbs Random Field (MGRF)neural networkSARS-CoV-2

Identifiers

PMID35328249
PMCPMC8947065

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.