Evidence map›Paper›PMID 35325592›Full record

ArticleCell2022

Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.

Fengbin Wang, Virginija Cvirkaite-Krupovic, Matthijn Vos, Leticia C Beltran, Mark A B Kreutzberger, Jean-Marie Winter, Zhangli Su, Jun Liu, Stefan Schouten, Mart Krupovic and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
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  4. Designability of α-Helical Protein Filaments.Sub-cellular biochemistry · 2026
    Review
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  19. The Expanding Diversity of Viruses from Extreme Environments.International journal of molecular sciences · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Fengbin WangDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA.
Virginija Cvirkaite-KrupovicInstitut Pasteur, Université de Paris, CNRS UMR 6047, Archaeal Virology Unit, 75015 Paris, France.
Matthijn VosNanoImaging Core Facility, Centre de Ressources et Recherches Technologiques (C2RT), Institut Pasteur, 75015 Paris, France.
Leticia C BeltranDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA.
Mark A B KreutzbergerDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA.
Jean-Marie WinterNanoImaging Core Facility, Centre de Ressources et Recherches Technologiques (C2RT), Institut Pasteur, 75015 Paris, France.
Zhangli SuDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA.
Jun LiuDepartment of Microbial Pathogenesis & Microbial Sciences Institute, Yale University School of Medicine, New Haven, CT 06510, USA.
Stefan SchoutenNIOZ Royal Netherlands Institute for Sea Research, Department of Marine Microbiology and Biogeochemistry, Texel, the Netherlands.
Mart KrupovicInstitut Pasteur, Université de Paris, CNRS UMR 6047, Archaeal Virology Unit, 75015 Paris, France. Electronic address: mart.krupovic@pasteur.fr.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA. Electronic address: egelman@virginia.edu.
University of Virginia · USCentre National de la Recherche Scientifique · FRInstitut Pasteur · FRRoyal Netherlands Institute for Sea Research · NLYale University · US

Funding

Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Understanding and using microbial conductive nanowiresK99GM138756 · NIGMS · UNIVERSITY OF VIRGINIA · PI WANG, FENGBIN · 2021 to 2022
$130k
NIGMS NIH HHS K99 GM138756NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.

Indexed as

Archaeal VirusesCapsidCapsid ProteinsGenome, ViralVirionCapsid Proteinscapsidscryo-EMextremeophileshelical polymersviral evolution

Identifiers

PMID35325592
PMCPMC9018610
OpenAlexW4221097152

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.