Evidence map›Paper›PMID 35325163›Full record

ArticleThe Journal of infectious diseases2022

Enhancing Meningococcal Genomic Surveillance in the Meningitis Belt Using High-Resolution Culture-Free Whole-Genome Sequencing.

Mark Itsko, Nadav Topaz, Sani Ousmane-Traoré, Micheal Popoola, Rasmata Ouedraogo, Kadidja Gamougam, Adodo Yao Sadji, Abass Abdul-Karim, Christine Lascols, Xin Wang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. StrengtheningJournal of clinical microbiology · 2024
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 7 countries.

Mark ItskoWDS Inc, Contractor to Centers for Disease Control and Prevention, Atlanta, Georgia, USA.ORCID 0000-0003-1585-8897
Nadav TopazCDC Foundation field employee assigned to Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Sani Ousmane-TraoréCentre de Recherche Médicale et Sanitaire, Niamey, Niger.
Micheal PopoolaNigeria Centre for Disease Control, Abuja, Nigeria.
Rasmata OuedraogoMinistère de la Santé du Burkina Faso, Ouagadougou, Burkina Faso.
Kadidja GamougamHôpital Général de Référence National, N'Djamena, Chad.
Adodo Yao SadjiMinistère de la Santé et de la Protection Sociale du Togo, Lomé, Togo.
Abass Abdul-KarimGhana Health Services, Zonal Public Health Laboratory, Tamale, Ghana.
Christine LascolsCDC Foundation field employee assigned to Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Xin WangCenters for Disease Control and Prevention, Atlanta, Georgia, USA.
Centers for Disease Control and Prevention · USCentre de Recherche Médicale et Sanitaire · NEGhana Health Service · GHMinistère De La Santé · BFNigeria Centre for Disease Control · NGTogolese Ministry of Health · TGUniversity of N'Djamena · TD

Funding

CDC HHSIntramural CDC HHS CC999999
6 · The paper itself

Abstract

Rollout of meningococcal serogroup A conjugate vaccine in Africa started in 2010, aiming to eliminate meningitis outbreaks, in meningitis belt countries. Since then, studies have been conducted, primarily using isolates, to assess the vaccine impact on the distribution of meningococcal strains in the region. Here, we implemented an innovative, culture-free whole-genome sequencing approach on almost 400 clinical specimens collected between 2017 and 2019 from meningococcal meningitis cases in 6 African countries. About 50% of specimens provided high-quality whole-genome sequence data for comprehensive molecular profiling of the meningococcal pathogen. Three major clonal complexes were identified: CC11 associated with serogroup W, CC181 associated with serogroup X, and CC10217 associated with serogroup C, which continues to rise as a predominant clonal complex in the region. Genomic surveillance for meningococcal meningitis can be significantly improved using culture-free methods to increase data representativeness and monitor changes in epidemiological landscape, especially for countries with low culture rate.

Indexed as

Meningitis, MeningococcalMeningococcal VaccinesNeisseria meningitidisGenomicsHumansVaccines, CombinedVaccines, ConjugateMeningococcal VaccinesVaccines, CombinedVaccines, Conjugateculture-free whole-genome sequencingmeningococcal meningitis surveillanceNeisseria meningitidisselective whole-genome amplificationtargeted sequencing

Identifiers

PMID35325163
PMCPMC11091911
OpenAlexW4220899745

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.