Evidence map›Paper›PMID 35325111›Full record

ArticleJournal of experimental botany2022

Molecular basis of differential adventitious rooting competence in poplar genotypes.

Alok Ranjan, Irene Perrone, Sanaria Alallaq, Rajesh Singh, Adeline Rigal, Federica Brunoni, Walter Chitarra, Frederic Guinet, Annegret Kohler, Francis Martin and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Plants (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Article
  11. Transcriptomic profiles of poplar (Frontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Alok RanjanUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0003-1765-1830
Irene PerroneUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0001-5129-1571
Sanaria AlallaqUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0002-2961-6373
Rajesh SinghUmeå Plant Science Centre, Department of Forest Genetics and Physiology, Swedish Agricultural University, SE-90183 Umeå, Sweden.
Adeline RigalUniversité de Lorraine, INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Champenoux, 54280France.
Federica BrunoniUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0003-1497-9419
Walter ChitarraInstitute for Sustainable Plant Protection, National Research Council of Italy (IPSP-CNR), I-10135 Torino, Italy.ORCID 0000-0002-5382-3794
Frederic GuinetUniversité de Lorraine, INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Champenoux, 54280France.
Annegret KohlerUniversité de Lorraine, INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Champenoux, 54280France.ORCID 0000-0002-9575-9567
Francis MartinUniversité de Lorraine, INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Champenoux, 54280France.ORCID 0000-0002-4737-3715
Nathaniel R StreetUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0001-6031-005X
Rishikesh BhaleraoUmeå Plant Science Centre, Department of Forest Genetics and Physiology, Swedish Agricultural University, SE-90183 Umeå, Sweden.ORCID 0000-0003-4384-7036
Valérie LeguéUniversité de Lorraine, INRAE, UMR Interactions Arbres/Microorganismes, Laboratory of Excellence ARBRE, INRAE GrandEst-Nancy, Champenoux, 54280France.ORCID 0000-0003-2090-9580
Catherine BelliniUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, SE-90736 Umeå, Sweden.ORCID 0000-0003-2985-6649
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUmeå Plant Science Centre · SEAgroParisTech · FRCereal Research Centre · ITInstitute for Sustainable Plant Protection · ITUniversity of Baghdad · IQ

Funding

Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems ANR-11-LABX-0002-01
6 · The paper itself

Abstract

Recalcitrant adventitious root (AR) development is a major hurdle in propagating commercially important woody plants. Although significant progress has been made to identify genes involved in subsequent steps of AR development, the molecular basis of differences in apparent recalcitrance to form AR between easy-to-root and difficult-to-root genotypes remains unknown. To address this, we generated cambium tissue-specific transcriptomic data from stem cuttings of hybrid aspen, T89 (difficult-to-root) and hybrid poplar OP42 (easy-to-root), and used transgenic approaches to verify the role of several transcription factors in the control of adventitious rooting. Increased peroxidase activity was positively correlated with better rooting. We found differentially expressed genes encoding reactive oxygen species scavenging proteins to be enriched in OP42 compared with T89. A greater number of differentially expressed transcription factors in cambium cells of OP42 compared with T89 was revealed by a more intense transcriptional reprograming in the former. PtMYC2, a potential negative regulator, was less expressed in OP42 compared with T89. Using transgenic approaches, we demonstrated that PttARF17.1 and PttMYC2.1 negatively regulate adventitious rooting. Our results provide insights into the molecular basis of genotypic differences in AR and implicate differential expression of the master regulator MYC2 as a critical player in this process.

Indexed as

Gene Expression Regulation, PlantPopulusGenotypePlant ProteinsPlant RootsTranscription FactorsPlant ProteinsTranscription FactorsAdventitious rootscambiumhybrid aspenhybrid poplarPopulus sppstem cuttings

Identifiers

PMID35325111
PMCPMC9232201
OpenAlexW4220879062

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.