Evidence map›Paper›PMID 35325007›Full record

ArticlePloS one2022

Genomics of human and chicken Salmonella isolates in Senegal: Broilers as a source of antimicrobial resistance and potentially invasive nontyphoidal salmonellosis infections.

Yakhya Dieye, Dawn M Hull, Abdoul Aziz Wane, Lyndy Harden, Cheikh Fall, Bissoume Sambe-Ba, Abdoulaye Seck, Paula J Fedorka-Cray, Siddhartha Thakur

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Natural Products AgainstMicroorganisms · 2026
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  4. Microorganisms · 2026
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  5. Genomic Characterization ofMicroorganisms · 2026
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  7. Investigating the dynamics ofFrontiers in veterinary science · 2026
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  8. A spotlight on multidrug-resistantFrontiers in microbiology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Characterization ofFrontiers in microbiology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Invasive non-typhoidalFrontiers in microbiology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Yakhya DieyePole of Microbiology, Institut Pasteur, Dakar, Sénégal.ORCID 0000-0003-2461-6558
Dawn M HullDepartment of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Abdoul Aziz WanePole of Microbiology, Institut Pasteur, Dakar, Sénégal.
Lyndy HardenDepartment of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Cheikh FallPole of Microbiology, Institut Pasteur, Dakar, Sénégal.
Bissoume Sambe-BaPole of Microbiology, Institut Pasteur, Dakar, Sénégal.
Abdoulaye SeckPole of Microbiology, Institut Pasteur, Dakar, Sénégal.
Paula J Fedorka-CrayDepartment of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Siddhartha ThakurDepartment of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America.
Institut Pasteur de Dakar · SNNorth Carolina State University · US

Funding

FDA HHS
6 · The paper itself

Abstract

Salmonella enterica is the most common foodborne pathogen worldwide. It causes two types of diseases, a self-limiting gastroenteritis and an invasive, more threatening, infection. Salmonella gastroenteritis is caused by several serotypes and is common worldwide. In contrast, invasive salmonellosis is rare in high-income countries (HIC) while frequent in low- and middle-income countries (LMIC), especially in sub-Saharan Africa (sSA). Invasive Nontyphoidal Salmonella (iNTS), corresponding to serotypes other than Typhi and Paratyphi, have emerged in sSA and pose a significant risk to public health. We conducted a whole-genome sequence (WGS) analysis of 72 strains of Salmonella isolated from diarrheic human patients and chicken meat sold in multipurpose markets in Dakar, Senegal. Antimicrobial susceptibility testing combined with WGS data analysis revealed frequent resistance to fluoroquinolones and the sulfamethoxazole-trimethoprim combination that are among the most used treatments for invasive Salmonella. In contrast, resistance to the historical first-line drugs chloramphenicol and ampicillin, and to cephalosporins was rare. Antimicrobial resistance (AMR) was lower in clinical isolates compared to chicken strains pointing to the concern posed by the excessive use of antimicrobials in farming. Phylogenetic analysis suggested possible transmission of the emerging multidrug resistant (MDR) Kentucky ST198 and serotype Schwarzengrund from chicken to human. These results stress the need for active surveillance of Salmonella and AMR in order to address invasive salmonellosis caused by nontyphoidal Salmonella strains and other important bacterial diseases in sSA.

Indexed as

GastroenteritisSalmonella InfectionsAnimalsAnti-Bacterial AgentsChickensDrug Resistance, BacterialDrug Resistance, Multiple, BacterialGenomicsHumansMicrobial Sensitivity TestsPhylogenySalmonellaSenegalAnti-Bacterial Agents

Identifiers

PMID35325007
PMCPMC8947133
OpenAlexW4220979871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.