ArticlePLoS computational biology2022
Ten quick tips for deep learning in biology.
Abstract read
In one paragraph
Article in PLoS computational biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed.
- Twelve quick tips for applying deep learning to animal sounds.PLoS computational biology · 2026Article
- Gene dependency-informed inference of response to targeted cancer therapies.Nature communications · 2026Article
- Development and Validation of a SHAP-Interpretable Machine Learning Model for Stroke Risk Prediction Using Circulating MicroRNA Biomarkers.Journal of molecular neuroscience : MN · 2026Article
- Nine quick tips for trustworthy machine learning in the biomedical sciences.PLoS computational biology · 2025Article
- A deep learning model for accurate segmentation of the Drosophila melanogaster brain from Micro-CT imaging.Developmental biology · 2025Article
- A versatile information retrieval framework for evaluating profile strength and similarity.Nature communications · 2025Article
- Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle.Molecular biology of the cell · 2025Article
- Virtual cells for predictive immunotherapy.Nature biotechnology · 2025Article
- A versatile information retrieval framework for evaluating profile strength and similarity.bioRxiv : the preprint server for biology · 2025Article
- Biological databases in the age of generative artificial intelligence.Bioinformatics advances · 2025Article
- Article
- Drug Discovery in the Age of Artificial Intelligence: Transformative Target-Based Approaches.International journal of molecular sciences · 2024Review
- Gene signatures for cancer research: A 25-year retrospective and future avenues.PLoS computational biology · 2024Article
- Seven quick tips for gene-focused computational pangenomic analysis.BioData mining · 2024Article
- Constructing a Clinical Patient Similarity Network of Gastric Cancer.Bioengineering (Basel, Switzerland) · 2024Article
- Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions.Journal of microscopy · 2024Article
- Creating and troubleshooting microscopy analysis workflows: common challenges and common solutions.ArXiv · 2024Article
- Pitfalls of machine learning models for protein-protein interaction networks.Bioinformatics (Oxford, England) · 2024Article
- Ten simple rules for writing a PLOS Computational Biology quick tips article.PLoS computational biology · 2023Article
- Machine Learning-Guided Protein Engineering.ACS catalysis · 2023Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
20 authors.
Benjamin D LeeIn-Q-Tel Labs, Arlington, Virginia, United States of America.ORCID 0000-0002-7133-8397
Anthony GitterDepartment of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.ORCID 0000-0002-5324-9833
Casey S GreeneDepartment of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0001-8713-9213
Sebastian RaschkaDepartment of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.ORCID 0000-0001-6989-4493
Finlay MaguireFaculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada.ORCID 0000-0002-1203-9514
Alexander J TitusUniversity of New Hampshire, Manchester, New Hampshire, United States of America.ORCID 0000-0002-0145-9564
Michael D KesslerDepartment of Oncology, Johns Hopkins University, Baltimore, Maryland, United States of America.ORCID 0000-0003-1258-5221
Alexandra J LeeDepartment of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-0208-3730
Marc G ChevretteWisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.ORCID 0000-0002-7209-0717
Paul Allen StewartDepartment of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America.ORCID 0000-0003-0882-308X
Thiago Britto-BorgesSection of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg, Germany.ORCID 0000-0002-6218-4429
Evan M CoferLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America.ORCID 0000-0003-3877-0433
Kun-Hsing YuDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-9892-8218
Juan Jose CarmonaPhilips Healthcare, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-3029-4658
Elana J FertigDepartment of Oncology, Johns Hopkins University, Baltimore, Maryland, United States of America.ORCID 0000-0003-3204-342X
Alexandr A KalininMedical Big Data Group, Shenzhen Research Institute of Big Data, Shenzhen, China.ORCID 0000-0003-4563-3226
Brandon SignalSchool of Medicine, College of Health and Medicine, University of Tasmania, Hobart, Australia.ORCID 0000-0002-6839-2392
Benjamin J LengerichComputer Science Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.ORCID 0000-0001-8690-9554
Timothy J TricheCenter for Epigenetics, Van Andel Research Institute, Grand Rapids, Michigan, United States of America.
Simina M BocaInnovation Center for Biomedical Informatics, Georgetown University Medical Center, District of Columbia, United States of America.ORCID 0000-0002-1400-3398
Funding
Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI WILLIAM George NELSON · 1985 to 2026
$208.6MTRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5MQuantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9MNetwork-based algorithms for target identification and drug repositioning from genetic associationsR01HG010067 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI GREENE, CASEY S · 2018 to 2022
$3.2MIntegrating bioinformatics into multiscale models for hepatocellular carcinomaU01CA212007 · NCI · JOHNS HOPKINS UNIVERSITY · PI EWALD, ANDREW JOSEF, FERTIG, ELANA · 2018 to 2022
$3.2MDelineating chromatin-related gene expression signatures as a function of HNSCC progressionR01DE027809 · NIDCR · UNIVERSITY OF MARYLAND BALTIMORE · PI GAYKALOVA, DARIA A, IZUMCHENKO, EVGENY (EUGENE) G · 2019 to 2023
$2.6MRobust, Generalizable, and Fair Machine Learning Models for BiomedicineR35GM142879 · NIGMS · HARVARD MEDICAL SCHOOL · PI YU, KUN-HSING · 2021 to 2025
$2.4MMitigating Hematologic Adverse Events in Patients with Myeloid Malignancies: A Novel Causal Artificial Intelligence ApproachR01HL174679 · NHLBI · HARVARD MEDICAL SCHOOL · PI Kun-Hsing Yu · 2024 to 2026
$2.3MA Machine Learning Platform for Adaptive Chemical ScreeningR01GM135631 · NIGMS · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI GITTER, ANTHONY JAMES · 2020 to 2024
$2.1MSingle-cell and imaging data integration software to spatially resolve the tumor microenvironmentU01CA253403 · NCI · JOHNS HOPKINS UNIVERSITY · PI FERTIG, ELANA · 2020 to 2022
$1.2MChromatin architecture as a determinant of dendritic cell functionR21AI153997 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI KRAWCZYK, CONNIE · 2020 to 2021
$523kIntegration of 3D primary tumor drug-profiling with patient-specific drug gene networks for recommending targeted cancer therapies (2 of 2).R21CA220398 · NCI · GEORGETOWN UNIVERSITY · PI BOCA, SIMINA MARIA · 2017 to 2019
$497kNCI NIH HHS P30 CA006973NCI NIH HHS P30 CA076292NCI NIH HHS R21 CA220398NCI NIH HHS U01 CA212007NCI NIH HHS U01 CA253403NHGRI NIH HHS R01 HG010067NHGRI NIH HHS T32 HG003284NHLBI NIH HHS R01 HL174679NIAID NIH HHS R21 AI153997NIDCR NIH HHS R01 DE027809NIGMS NIH HHS R01 GM135631NIGMS NIH HHS R35 GM142879
Abstract
PubMed holds no abstract for this paper.
Indexed as
Deep LearningComputational Biology
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.