Evidence map›Paper›PMID 35324388›Full record

ArticleEpigenetics2022

Non-alcoholic fatty liver disease-associated DNA methylation and gene expression alterations in the livers of Collaborative Cross mice fed an obesogenic high-fat and high-sucrose diet.

Volodymyr P Tryndyak, Rose A Willett, Mark I Avigan, Arun J Sanyal, Frederick A Beland, Ivan Rusyn, Igor P Pogribny

Open access · greenAbstract read
In one paragraph

Article in Epigenetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Mediation analysis of the molecular phenotypes in a severe MASH-like liver injury mouse model.Toxicological sciences : an official journal of the Society of Toxicology · 2025
    Article
  2. Review
  3. Review
  4. Biomedicines · 2024
    Review
  5. Epigenetic Regulation of Hepatic Lipid Metabolism by DNA Methylation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  6. Physiopathology of nonalcoholic fatty liver disease: from diet to nutrigenomics.Current opinion in clinical nutrition and metabolic care · 2022
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Volodymyr P TryndyakDivision of Biochemical Toxicology, FDA-National Center for Toxicological Research, Jefferson, Arkansas, USA.
Rose A WillettDivision of Biochemical Toxicology, FDA-National Center for Toxicological Research, Jefferson, Arkansas, USA.
Mark I AviganOffice of Pharmacovigilance and Epidemiology, FDA-Center for Drug Evaluation and Research, Silver Spring, Maryland, USA.
Arun J SanyalDepartment of Internal Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
Frederick A BelandDivision of Biochemical Toxicology, FDA-National Center for Toxicological Research, Jefferson, Arkansas, USA.
Ivan RusynDepartment of Veterinary Integrative Biosciences, Texas A&m University, College Station, Texas, USA.
Igor P PogribnyDivision of Biochemical Toxicology, FDA-National Center for Toxicological Research, Jefferson, Arkansas, USA.
National Center for Toxicological Research · USCenter for Drug Evaluation and Research · USTexas A&M University · USVirginia Commonwealth University · US

Funding

Chromatin regions, genes and pathways that confer susceptibility to chemical-induced DNA damageR01ES029911 · NIEHS · TEXAS A&M AGRILIFE RESEARCH · PI RUSYN, IVAN, THREADGILL, DAVID W. · 2019 to 2023
$3.3M
NIEHS NIH HHS R01 ES029911
6 · The paper itself

Abstract

Non-alcoholic fatty liver disease (NAFLD) is a highly prevalent chronic liver disease, and patient susceptibility to its onset and progression is influenced by several factors. In this study, we investigated whether altered hepatic DNA methylation in liver tissue correlates with the degree of severity of NAFLD-like liver injury induced by a high-fat and high-sucrose (HF/HS) diet in Collaborative Cross (CC) mice. Using genome-wide targeted bisulphite DNA methylation next-generation sequencing, we found that mice with different non-alcoholic fatty liver (NAFL) phenotypes could be distinguished by changes in hepatic DNA methylation profiles. Specifically, NAFL-prone male CC042 mice exhibited more prominent DNA methylation changes compared with male CC011 mice and female CC011 and CC042 mice that developed only a mild NAFL phenotype. Moreover, these mouse strains demonstrated different patterns of DNA methylation. While the HF/HS diet induced both DNA hypomethylation and DNA hypermethylation changes in all the mouse strains, the NAFL-prone male CC042 mice demonstrated a global predominance of DNA hypermethylation, whereas a more pronounced DNA hypomethylation pattern developed in the mild-NAFL phenotypic mice. In a targeted analysis of selected genes that contain differentially methylated regions (DMRs), we identified NAFL phenotype-associated differences in DNA methylation and gene expression of the

Indexed as

Non-alcoholic Fatty Liver DiseaseAnimalsCollaborative Cross MiceDietDiet, High-FatDNADNA MethylationFemaleGene ExpressionHumansLiverMaleMiceSucroseDNASucroseCollaborative Cross miceDNA methylationgene expressionGLS2non-alcoholic fatty liver disease

Identifiers

PMID35324388
PMCPMC9586642
OpenAlexW4220871398

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.