ArticleScientific reports2022
Draft genomes assembly and annotation of Carex parvula and Carex kokanica reveals stress-specific genes.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed, 15 citations in OpenAlex.
- Review
- Physiological Responses of Dominant Alpine Plant Species to Environmental Gradients on the Tibetan Plateau.Plants (Basel, Switzerland) · 2026Article
- The genome sequence of the starved wood-sedge,Wellcome open research · 2026Article
- Forage Crop Research in the Modern Age.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Review
- The genome of Eleocharis vivipara elucidates the genetics of CJournal of integrative plant biology · 2024Article
- The genome assembly of Carex breviculmis provides evidence for its phylogenetic localization and environmental adaptation.Annals of botany · 2024Article
- Genome Assembly and Microsatellite Marker Development Using Illumina and PacBio Sequencing in theGenes · 2023Article
- The chromosome-scale genome of Kobresia myosuroides sheds light on karyotype evolution and recent diversification of a dominant herb group on the Qinghai-Tibet Plateau.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Chromosome-scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus, and Juncus inflexus.G3 (Bethesda, Md.) · 2022Article
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Authors and funding
12 authors at 2 institutions in 1 country.
Funding
Abstract
Kobresia plants are important forage resources on the Qinghai-Tibet Plateau and are essential in maintaining the ecological balance of grasslands. Therefore, it is beneficial to obtain Kobresia genome resources and study the adaptive characteristics of Kobresia plants on the Qinghai-Tibetan Plateau. Previously, we have assembled the genome of Carex littledalei (Kobresia littledalei), which is a diploid with 29 chromosomes. In this study, we assembled genomes of Carex parvula (Kobresia pygmaea) and Carex kokanica (Kobresia royleana) via using Illumina and PacBio sequencing data, which were about 783.49 Mb and 673.40 Mb in size, respectively. And 45,002 or 36,709 protein-coding genes were further annotated in the genome of C. parvula or C. kokanica. Phylogenetic analysis indicated that Kobresia in Cyperaceae separated from Poaceae about 101.5 million years ago after separated from Ananas comosus in Bromeliaceae about 117.2 million years ago. C. littledalei and C. parvula separated about 5.0 million years ago, after separated from C. kokanica about 6.2 million years ago. In this study, transcriptome data of C. parvula at three different altitudes were also measured and analyzed. Kobresia plants genomes assembly and transcriptome analysis will assist research into mechanisms of plant adaptation to environments with high altitude and cold weather.
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