Evidence map›Paper›PMID 35322035›Full record

ArticleScientific data2022

Three-dimensional structured illumination microscopy data of mitochondria and lysosomes in cardiomyoblasts under normal and galactose-adapted conditions.

Ida S Opstad, Gustav Godtliebsen, Florian Ströhl, Truls Myrmel, Balpreet Singh Ahluwalia, Krishna Agarwal, Åsa Birna Birgisdottir

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ida S OpstadDepartment of Physics and Technology, UiT The Arctic University of Norway, Tromsø, 9019, Norway. ida.s.opstad@uit.no.ORCID 0000-0003-4462-4600
Gustav GodtliebsenDepartment of Clinical Medicine, UiT The Arctic University of Norway, Tromsø, 9019, Norway.
Florian StröhlDepartment of Physics and Technology, UiT The Arctic University of Norway, Tromsø, 9019, Norway.ORCID 0000-0002-2603-0780
Truls MyrmelDepartment of Clinical Medicine, UiT The Arctic University of Norway, Tromsø, 9019, Norway.
Balpreet Singh AhluwaliaDepartment of Physics and Technology, UiT The Arctic University of Norway, Tromsø, 9019, Norway.
Krishna AgarwalDepartment of Physics and Technology, UiT The Arctic University of Norway, Tromsø, 9019, Norway.
Åsa Birna BirgisdottirDepartment of Clinical Medicine, UiT The Arctic University of Norway, Tromsø, 9019, Norway.
UiT The Arctic University of Norway · NOUniversity Hospital of North Norway · NOKarolinska Institutet · SE

Funding

EC | EC Seventh Framework Programm | FP7 People: Marie-Curie Actions (FP7-PEOPLE - Specific Programme "People" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) 836355Helse Nord RHF (Northern Norway Regional Health Authority) HNF144919Norges Forskningsråd (Research Council of Norway) 314546
6 · The paper itself

Abstract

This three-dimensional structured illumination microscopy (3DSIM) dataset was generated to highlight the suitability of 3DSIM to investigate mitochondria-derived vesicles (MDVs) in H9c2 cardiomyoblasts in living or fixed cells. MDVs act as a mitochondria quality control mechanism. The cells were stably expressing the tandem-tag eGFP-mCherry-OMP25-TM (outer mitochondrial membrane) which can be used as a sensor for acidity. A part of the dataset is showing correlative imaging of lysosomes labeled using LysoTracker in fixed and living cells. The cells were cultivated in either normal or glucose-deprived medium containing galactose. The resulting 3DSIM data were of high quality and can be used to undertake a variety of studies. Interestingly, many dynamic tubules derived from mitochondria are visible in the 3DSIM videos under both glucose and galactose-adapted growth conditions. As the raw 3DSIM data, optical parameters, and reconstructed 3DSIM images are provided, the data is especially suitable for use in the development of SIM reconstruction algorithms, bioimage analysis methods, and for biological studies of mitochondria.

Indexed as

GalactoseLysosomesMitochondriaMyoblasts, CardiacAnimalsGlucoseLightingMicroscopyRatsGalactoseGlucose

Identifiers

PMID35322035
PMCPMC8943179
OpenAlexW4220918788

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.