Evidence map›Paper›PMID 35321919›Full record

ArticleLife science alliance2022

Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly.

Haruka Matsumori, Kenji Watanabe, Hiroaki Tachiwana, Tomoko Fujita, Yuma Ito, Makio Tokunaga, Kumiko Sakata-Sogawa, Hiroko Osakada, Tokuko Haraguchi, Akinori Awazu and 9 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Mechanisms of ribosomopathy and phase separation-related ribosomopathy.Journal of Zhejiang University. Science. B · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 2 countries.

Haruka MatsumoriDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Kenji WatanabeCancer Institute of Japanese Foundation for Cancer Research, Tokyo, Japan.
Hiroaki TachiwanaCancer Institute of Japanese Foundation for Cancer Research, Tokyo, Japan.
Tomoko FujitaCancer Institute of Japanese Foundation for Cancer Research, Tokyo, Japan.
Yuma ItoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Makio TokunagaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Kumiko Sakata-SogawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Hiroko OsakadaAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Kobe, Japan.
Tokuko HaraguchiAdvanced ICT Research Institute Kobe, National Institute of Information and Communications Technology, Kobe, Japan.ORCID 0000-0002-3813-6785
Akinori AwazuGraduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Japan.
Hiroshi OchiaiGraduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Japan.ORCID 0000-0002-2200-1325
Yuka SakataCancer Institute of Japanese Foundation for Cancer Research, Tokyo, Japan.
Koji OchiaiDAIZ Inc, Kumamoto, Japan.
Tsutomu TokiDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki, Japan.ORCID 0000-0002-0061-9781
Etsuro ItoDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki, Japan.ORCID 0000-0002-0168-2475
Ilya G GoldbergImage Informatics and Computational Biology Unit, Laboratory of Genetics, National Institute on Aging, National Institutes of Health, Baltimore, MD, USA.ORCID 0000-0001-8514-6110
Kazuaki TokunagaDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Mitsuyoshi NakaoDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan mnakao@gpo.kumamoto-u.ac.jp.ORCID 0000-0002-2196-8673
Noriko SaitohCancer Institute of Japanese Foundation for Cancer Research, Tokyo, Japan noriko.saito@jfcr.or.jp.ORCID 0000-0002-2601-2806
Japanese Foundation For Cancer Research · JPKumamoto University · JPTokyo Institute of Technology · JPHirosaki University · JPHiroshima University · JPNational Institute of Information and Communications Technology · JPNational Institutes of Health · USUbe Frontier University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nucleolus is the site of ribosome assembly and formed through liquid-liquid phase separation. Multiple ribosomal DNA (rDNA) arrays are bundled in the nucleolus, but the underlying mechanism and significance are unknown. In the present study, we performed high-content screening followed by image profiling with the wndchrm machine learning algorithm. We revealed that cells lacking a specific 60S ribosomal protein set exhibited common nucleolar disintegration. The depletion of RPL5 (also known as uL18), the liquid-liquid phase separation facilitator, was most effective, and resulted in an enlarged and un-separated sub-nucleolar compartment. Single-molecule tracking analysis revealed less-constrained mobility of its components. rDNA arrays were also unbundled. These results were recapitulated by a coarse-grained molecular dynamics model. Transcription and processing of ribosomal RNA were repressed in these aberrant nucleoli. Consistently, the nucleoli were disordered in peripheral blood cells from a Diamond-Blackfan anemia patient harboring a heterozygous, large deletion in

Indexed as

Cell NucleolusRibosomal ProteinsDNA, RibosomalHumansDNA, Ribosomalribosomal protein L5Ribosomal Proteins

Identifiers

PMID35321919
PMCPMC8942980
OpenAlexW4221131902

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.