ArticlePeerJ2022
High-performance pipeline for MutMap and QTL-seq.
Article in PeerJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Identification and characterization ofHorticulture research · 2026Article
- Fine Mapping and Candidate Gene Analysis of a Major Locus Controlling Black Seed Coat Color in Mung Bean (Plants (Basel, Switzerland) · 2026Article
- MutMap Reveals a Structural Deletion at theGenes · 2026Article
- Identification of a novel mutant allele of the LIKE EARLY STARVATION 1 gene in rice (Oryza sativa L.) using QTL-seq.G3 (Bethesda, Md.) · 2026Article
- A Novel Mutation in Maize D1 (Dwarf 1) Confers a Severe Dwarf Phenotype.Current issues in molecular biology · 2026Article
- A NovelPlants (Basel, Switzerland) · 2026Article
- Telomere-to-telomere genome assembly and a mutant library empower functional genomics and genetic improvement in Cucurbita moschata.Plant communications · 2026Article
- A key gene for vernalization-independent bolting under extra-long days in biennial sugar beet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- QTL-Seq Identifies Extra QTLs and Candidate Genes Controlling High Haploid Induction Rate in Maize.Plants (Basel, Switzerland) · 2026Article
- A 725-bp quadruple repeat in the promoter ofHorticulture research · 2026Article
- A neofunctionalized flowering antagonist created an evolutionary contingency that channeled Solanaceae adaptation.bioRxiv : the preprint server for biology · 2026Article
- Mutation in HER1 enhances stigma exsertion and hybrid seed production in rice.Nature communications · 2026Article
- Trait Mapping Utilizing a Newly Constructed Genome for Allohexaploid Invasive Eurasian Watermilfoil (Evolutionary applications · 2026Article
- Lumi-Map, a Luciferase Bioluminescence Screen of Mutants Combined with MutMap Allows Rapid Dissection of Plant Immune Signaling Pathways.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Identification of AhFPA1 as the causal gene underlying qEFT13.1, a key QTL for early flowering in peanut.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Detection of three novel loci involved in reduced seed-shattering behaviour of an aus rice cultivar, Oryza sativa Kasalath.Molecular genetics and genomics : MGG · 2025Article
- MutMap-Based Cloning of a Soybean Mosaic Virus Resistance Gene.Plants (Basel, Switzerland) · 2025Article
- Seed shattering in common buckwheat (Fagopyrum esculentum): insights from RNA-seq and morphological analysis.BMC plant biology · 2025Article
- Article
- Tm-1 back in business: an allele from Solanum pennellii accessions plays a major role in ToBRFV resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Summary: Bulked segregant analysis implemented in MutMap and QTL-seq is a powerful and efficient method to identify loci contributing to important phenotypic traits. However, the previous pipelines were not user-friendly to install and run. Here, we describe new pipelines for MutMap and QTL-seq. These updated pipelines are approximately 5-8 times faster than the previous pipeline, are easier for novice users to use, and can be easily installed through bioconda with all dependencies. Availability: The new pipelines of MutMap and QTL-seq are written in Python and can be installed via bioconda. The source code and manuals are available online (MutMap: https://github.com/YuSugihara/MutMap, QTL-seq: https://github.com/YuSugihara/QTL-seq).
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.