Evidence map›Paper›PMID 35320348›Full record

ArticleCancer discovery2022

Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer.

Mihir Rajurkar, Aparna R Parikh, Alexander Solovyov, Eunae You, Anupriya S Kulkarni, Chong Chu, Katherine H Xu, Christopher Jaicks, Martin S Taylor, Connie Wu and 39 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Tenofovir, Interferon Pathways, and Mucosal Immunity: Implications for People Living With HIV.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
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  17. Review
  18. Transposons disrupt genomic stability and trigger cancers.Frontiers in cellular and infection microbiology · 2025
    Review
  19. Review
  20. Regulation and function of transposable elements in cancer genomes.Cellular and molecular life sciences : CMLS · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors at 6 institutions in 1 country.

Mihir Rajurkar *Mass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Aparna R Parikh *Mass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Alexander Solovyov *Computational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York.
Eunae YouMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Anupriya S KulkarniMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Chong ChuDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts.
Katherine H XuMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Christopher JaicksMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Martin S TaylorDepartment of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0001-5824-142X
Connie WuDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Katherine A AlexanderEpigenetics Institute, Departments of Cell and Developmental Biology, Genetics, and Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0001-6418-6615
Charly R GoodEpigenetics Institute, Departments of Cell and Developmental Biology, Genetics, and Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Annamaria SzabolcsMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Stefanie GerstbergerDepartment of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts.
Antuan V TranDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts.
Nova XuMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0001-6780-1978
Richard Y EbrightMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0001-8975-5810
Emily E Van SeventerMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Kevin D VoMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Eric C TaiMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Chenyue LuMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0002-7905-2078
Jasmin Joseph-ChazanMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Michael J RaabeMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Linda T NiemanMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0002-0141-8308
Niyati DesaiMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Kshitij S AroraMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Matteo LigorioMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Vishal ThaparMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Limor CohenDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Padric M GardenDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Yasmeen SenussiDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-6881-5455
Hui ZhengBiostatistics Center, Massachusetts General Hospital, Boston, Massachusetts.
Jill N AllenMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Lawrence S BlaszkowskyMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0002-9437-2977
Jeffrey W ClarkMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0001-9524-3600
Lipika GoyalMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Jennifer Y WoMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
David P RyanMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Ryan B CorcoranMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Vikram DeshpandeMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Miguel N RiveraMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.
Martin J AryeeMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0002-6848-1344
Theodore S HongMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0001-8481-6581
Shelley L BergerEpigenetics Institute, Departments of Cell and Developmental Biology, Genetics, and Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
David R WaltDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0002-5524-7348
Kathleen H BurnsDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.
Peter J ParkDepartment of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0001-9378-960X
Benjamin D GreenbaumComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York.
David T TingMass General Cancer Center, Harvard Medical School, Charlestown, Massachusetts.ORCID 0000-0002-3261-2322
Harvard University · USMassachusetts General Hospital · USBrigham and Women's Hospital · USMemorial Sloan Kettering Cancer Center · USUniversity of Pennsylvania · USCalifornia University of Pennsylvania · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Role of PCAF/GCN5 Acetylation on p53 TransactivationR01CA078831 · NCI · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 1999 to 2022
$7.8M
Interaction between nuclear epigenetic and metabolic pathways in cancerR35CA263922 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 2022 to 2026
$4.8M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
A Statistical Physics Framework for Understanding the Role of Repeat RNA in Tumor ImmunityU01CA228963 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2020 to 2024
$3.2M
Characterizing the LINE-1 Retrotransposition-Replication ConflictR01CA240816 · NCI · DANA-FARBER CANCER INST · PI BURNS, KATHLEEN H · 2020 to 2024
$2.0M
Expression and Impact of Interspersed RepeatsR01GM130680 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BURNS, KATHLEEN H · 2019 to 2022
$1.4M
Elucidating structural, mechanistic, and allosteric determinants of mTOR Complex 2 (mTORC2) signaling.K08DK129824 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI TAYLOR, MARTIN S · 2021 to 2025
$853k
Genome-scale CRISPR activation screening to identify lung-specific metastatic pathwaysF30CA232407 · NCI · HARVARD MEDICAL SCHOOL · PI EBRIGHT, RICHARD · 2018 to 2020
$118k
NCI NIH HHS F30 CA232407NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA078831NCI NIH HHS R01 CA240816NCI NIH HHS R01 CA240924NCI NIH HHS R35 CA263922NCI NIH HHS U01 CA228963NIDDK NIH HHS K08 DK129824NIGMS NIH HHS R01 GM130680NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Altered RNA expression of repetitive sequences and retrotransposition are frequently seen in colorectal cancer, implicating a functional importance of repeat activity in cancer progression. We show the nucleoside reverse transcriptase inhibitor 3TC targets activities of these repeat elements in colorectal cancer preclinical models with a preferential effect in p53-mutant cell lines linked with direct binding of p53 to repeat elements. We translate these findings to a human phase II trial of single-agent 3TC treatment in metastatic colorectal cancer with demonstration of clinical benefit in 9 of 32 patients. Analysis of 3TC effects on colorectal cancer tumorspheres demonstrates accumulation of immunogenic RNA:DNA hybrids linked with induction of interferon response genes and DNA damage response. Epigenetic and DNA-damaging agents induce repeat RNAs and have enhanced cytotoxicity with 3TC. These findings identify a vulnerability in colorectal cancer by targeting the viral mimicry of repeat elements. SIGNIFICANCE: Colorectal cancers express abundant repeat elements that have a viral-like life cycle that can be therapeutically targeted with nucleoside reverse transcriptase inhibitors (NRTI) commonly used for viral diseases. NRTIs induce DNA damage and interferon response that provide a new anticancer therapeutic strategy. This article is highlighted in the In This Issue feature, p. 1397.

Indexed as

Colorectal NeoplasmsRNA-Directed DNA PolymeraseAnimalsAntiviral AgentsDNAHumansInterferonsLamivudineLife Cycle StagesRNATumor Suppressor Protein p53Antiviral AgentsDNAInterferonsLamivudineRNARNA-Directed DNA PolymeraseTumor Suppressor Protein p53

Identifiers

PMID35320348
PMCPMC9167735
OpenAlexW4220963060

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.