Evidence map›Paper›PMID 35318820›Full record

ArticleMolecular genetics & genomic medicine2022

Analysis of X-inactivation status in a Rett syndrome natural history study cohort.

Xiaolan Fang, Kameryn M Butler, Fatima Abidi, Jennifer Gass, Arthur Beisang, Timothy Feyma, Robin C Ryther, Shannon Standridge, Peter Heydemann, Mary Jones and 9 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Rett syndrome: The Natural History Study journey.Annals of the Child Neurology Society · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Rett syndrome in Ireland: a demographic study.Orphanet journal of rare diseases · 2024
    Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 13 institutions in 1 country.

Xiaolan FangGreenwood Genetic Center, Greenwood, South Carolina, USA.ORCID 0000-0002-7056-7585
Kameryn M ButlerGreenwood Genetic Center, Greenwood, South Carolina, USA.
Fatima AbidiGreenwood Genetic Center, Greenwood, South Carolina, USA.
Jennifer GassFlorida Cancer Specialists & Research Institute, Fort Myers, FL, USA.
Arthur BeisangGillette Children's Specialty Healthcare, St. Paul, Minnesota, USA.
Timothy FeymaGillette Children's Specialty Healthcare, St. Paul, Minnesota, USA.
Robin C RytherDepartment of Neurology, Washington University School of Medicine, St. Louis, Missouri, USA.
Shannon StandridgeDivision of Neurology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, USA.
Peter HeydemannRush University Medical Center, Chicago, Illinois, USA.
Mary JonesOakland Children's Hospital, UCSF, Oakland, California, USA.
Richard HaasUniversity of California San Diego, San Diego, California, USA.
David N LiebermanDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Eric D MarshChildren's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Tim A BenkeUniversity of Colorado School of Medicine, Children's Hospital Colorado-Aurora, Denver, Colorado, USA.
Steve SkinnerGreenwood Genetic Center, Greenwood, South Carolina, USA.
Jeffrey L NeulVanderbilt Kennedy Center, Vanderbilt University Medical Center, Nashville TN.
Alan K PercyThe University of Alabama at Birmingham, Birmingham, Alabama, USA.
Michael J FriezGreenwood Genetic Center, Greenwood, South Carolina, USA.
Raymond C CaylorGreenwood Genetic Center, Greenwood, South Carolina, USA.ORCID 0000-0003-1067-2807
Greenwood Genetic Center · USGillette Children's Specialty Healthcare · USAssociated Research (United States) · USBoston Children's Hospital · USChildren's Hospital Colorado · USChildren's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USFlorida Cancer Specialists & Research Institute · USJohn F. Kennedy Center for the Performing Arts · USRush University Medical Center · USUniversity of Alabama at Birmingham · USUniversity of California San Diego · USWashington University in St. Louis · US

Funding

Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
NICHD NIH HHS P50 HD103537
6 · The paper itself

Abstract

backgroundRett syndrome (RTT) is a rare neurodevelopmental disorder associated with pathogenic MECP2 variants. Because the MECP2 gene is subject to X-chromosome inactivation (XCI), factors including MECP2 genotypic variation, tissue differences in XCI, and skewing of XCI all likely contribute to the clinical severity of individuals with RTT.

methodsWe analyzed the XCI patterns from blood samples of 320 individuals and their mothers. It includes individuals with RTT (n = 287) and other syndromes sharing overlapping phenotypes with RTT (such as CDKL5 Deficiency Disorder [CDD, n = 16]). XCI status in each proband/mother duo and the parental origin of the preferentially inactivated X chromosome were analyzed.

resultsThe average XCI ratio in probands was slightly increased compared to their unaffected mothers (73% vs. 69%, p = .0006). Among the duos with informative XCI data, the majority of individuals with classic RTT had their paternal allele preferentially inactivated (n = 180/220, 82%). In sharp contrast, individuals with CDD had their maternal allele preferentially inactivated (n = 10/12, 83%). Our data indicate a weak positive correlation between XCI skewing ratio and clinical severity scale (CSS) scores in classic RTT patients with maternal allele preferentially inactivated XCI (r

conclusionThese results extend our understanding of the pathogenesis of RTT and other syndromes with overlapping clinical features by providing insight into the both XCI and the preferential XCI of parental alleles.

Indexed as

Rett SyndromeGenotypeHumansMutationPhenotypeX Chromosome InactivationCDKL5 deficiency disorderMECP2preferential inactivation of parental allelesRett syndromeX-chromosome inactivation

Identifiers

PMID35318820
PMCPMC9034674
OpenAlexW4220991853

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.