ArticleFunctional & integrative genomics2022
Characteristics and comparative analysis of Mesona chinensis Benth chloroplast genome reveals DNA barcode regions for species identification.
Article in Functional & integrative genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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16 citing papers in PubMed.
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- Identification of key modules and genes in response to high-temperature stress in Platostoma palustre based on WGCNA.BMC plant biology · 2025Article
- Chloroplast genomic diversity in eleven Pennisetum species.Frontiers in genetics · 2025Article
- Comparative analysis of complete chloroplast genomes ofFrontiers in plant science · 2025Article
- Comparative Plastomics of Plantains (Plants (Basel, Switzerland) · 2024Article
- Phytohormones and related genes function as physiological and molecular switches regulating water stress response in the sunflower.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Effects of different colors of plastic-film mulching on soil temperature, yield, and metabolites in Platostoma palustre.Scientific reports · 2024Article
- Widely targeted metabolomics reveals the phytoconstituent changes inFrontiers in plant science · 2024Article
- Complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2024Article
- Comparative and phylogenetic analyses based on the complete chloroplast genome ofFrontiers in plant science · 2024Article
- The complete plastid genome and characteristics analysis of Achillea millefolium.Functional & integrative genomics · 2023Article
- Integrating LC-MS and HS-GC-MS for the metabolite characterization of the Chinese medicinal plantFrontiers in nutrition · 2023Article
- Mitochondrial genome characteristics and phylogenetic analysis of the medicinal and edible plantFrontiers in genetics · 2022Article
- Plastome-based phylogeny and biogeography ofFrontiers in plant science · 2022Article
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9 authors.
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Abstract
Mesona chinensis Benth (MCB) is an important medicinal and edible plant in Southern China and Southeast Asian countries. Chloroplast (cp) genome is usually used for plant phylogeny, species identification, and chloroplast genetic engineering. To characterize the cp genome and determine the evolutionary position and perform the genetic diversity analysis of MCB, we sequence and characterize the MCB cp genome. The results show that the cp genome of MCB is a single circular molecule with a length of 152,635 bp. It is a typical quadripartite structure, comprising a large single-copy region (LSC, 83,514 bp) and a small single-copy region (SSC, 17,751 bp) separated by two inverted repeat regions (IRs, 51,370 bp). It encodes 129 unique genes, including 84 protein-coding genes (PCGs), 37 transfer RNAs (tRNAs), and 8 ribosomal RNAs (rRNAs). Altogether 127 simple sequence repeats (SSRs) are identified in the MCB cp genome with 86.61% of mononucleotide repeats. Phylogenetic analysis reveals that MCB is most closely related to Ocimum basilicum based on the whole cp genomes. Several highly divergent regions are found, such as trnH_psbA, rps16_trnQ, trnS_trnG, trnE_trnT, psaA_ycf3, rpl32_trnL, ccsA_ndhD, ndhG_ndhI, and rps15_ycf1, which can be proposed for use as DNA barcode regions. Genetic diversity analysis unveils a relatively narrow genetic basis of MCB germplasm resources. Therefore, the innovative breeding of MCB is very urgent and necessary in future research.
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