Evidence map›Paper›PMID 35316014›Full record

ArticleACS chemical biology2022

Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases.

Juhi Singh, Rahul Raina, Kutti R Vinothkumar, Ruchi Anand

Abstract read
In one paragraph

Article in ACS chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Mechanistic insights into 50Science advances · 2025
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  3. Article
  4. Complete list of canonical post-transcriptional modifications in thebioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. 30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Juhi SinghDepartment of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India.
Rahul RainaNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru560065, India.
Kutti R VinothkumarNational Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru560065, India.
Ruchi AnandDepartment of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai400076, India.ORCID 0000-0002-2045-3758
Indian Institute of Technology Bombay · INTata Institute of Fundamental Research · IN

Funding

DBT-Wellcome Trust India Alliance IA/S/19/1/504293Wellcome Trust
6 · The paper itself

Abstract

Methylation of specific nucleotides is integral for ribosomal biogenesis and also serves as a common mechanism to confer antibiotic resistance by pathogenic bacteria. Here, by determining the high-resolution structure of the 30S-KsgA complex by cryo-electron microscopy, a state was captured, where KsgA juxtaposes between helices h44 and h45 of the 30S ribosome, separating them, thereby enabling remodeling of the surrounded rRNA and allowing the cognate site to enter the methylation pocket. With the structure as a guide, several mutant versions of the ribosomes, where interacting bases in the catalytic helix h45 and surrounding helices h44, h24, and h27, were mutated and evaluated for their methylation efficiency revealing factors that direct the enzyme to its cognate site with high fidelity. The biochemical studies show that the three-dimensional environment of the ribosome enables the interaction of select loop regions in KsgA with the ribosome helices paramount to maintain selectivity.

Indexed as

MethyltransferasesRNACryoelectron MicroscopyEscherichia coliRibosomesRNA, RibosomalRNA, Ribosomal, 16SMethyltransferasesRNARNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID35316014
PMCPMC7617139
OpenAlexW4220723858

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.