Evidence map›Paper›PMID 35314838›Full record

ArticleNature methods2022

DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy.

Bin Yang, Merlin Lange, Alfred Millett-Sikking, Xiang Zhao, Jordão Bragantini, Shruthi VijayKumar, Mason Kamb, Rafael Gómez-Sjöberg, Ahmet Can Solak, Wanpeng Wang and 7 more

Abstract read
In one paragraph

Article in Nature methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed.

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  10. Polarization-engineered aberration-resilient light sheet microscopy.bioRxiv : the preprint server for biology · 2026
    Article
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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Bin YangChan Zuckerberg Biohub, San Francisco, CA, USA. bin.yang@czbiohub.org.ORCID http://orcid.org/0000-0001-5138-4663
Merlin LangeChan Zuckerberg Biohub, San Francisco, CA, USA.
Alfred Millett-SikkingCalico Life Sciences LLC, South San Francisco, CA, USA.
Xiang ZhaoChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-3339-4806
Jordão BragantiniChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-7652-2735
Shruthi VijayKumarChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6679-1261
Mason KambChan Zuckerberg Biohub, San Francisco, CA, USA.
Rafael Gómez-SjöbergChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-8017-9669
Ahmet Can SolakChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-1381-8309
Wanpeng WangCardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, CA, USA.
Hirofumi KobayashiChan Zuckerberg Biohub, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-4505-2061
Matthew N McCarrollDepartment of Pharmaceutical Chemistry, University of California, San Francisco (UCSF), San Francisco, CA, USA.
Lachlan W WhiteheadThe Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-4388-9642
Reto P FiolkaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-4636-5000
Thomas B KornbergCardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, CA, USA.
Andrew G YorkCalico Life Sciences LLC, South San Francisco, CA, USA.
Loic A RoyerChan Zuckerberg Biohub, San Francisco, CA, USA. loic.royer@czbiohub.org.ORCID http://orcid.org/0000-0002-9991-9724

Funding

Transformative microscopes to image across spatiotemporal scalesR35GM133522 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Reto Paul Fiolka · 2019 to 2026
$3.1M
NIGMS NIH HHS R35 GM133522
6 · The paper itself

Abstract

The promise of single-objective light-sheet microscopy is to combine the convenience of standard single-objective microscopes with the speed, coverage, resolution and gentleness of light-sheet microscopes. We present DaXi, a single-objective light-sheet microscope design based on oblique plane illumination that achieves: (1) a wider field of view and high-resolution imaging via a custom remote focusing objective; (2) fast volumetric imaging over larger volumes without compromising image quality or necessitating tiled acquisition; (3) fuller image coverage for large samples via multi-view imaging and (4) higher throughput multi-well imaging via remote coverslip placement. Our instrument achieves a resolution of 450 nm laterally and 2 μm axially over an imaging volume of 3,000 × 800 × 300 μm. We demonstrate the speed, field of view, resolution and versatility of our instrument by imaging various systems, including Drosophila egg chamber development, zebrafish whole-brain activity and zebrafish embryonic development - up to nine embryos at a time.

Indexed as

BrainZebrafishAnimalsDrosophilaEmbryonic DevelopmentMicroscopy, Fluorescence

Identifiers

PMID35314838
PMCPMC9007742

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.