Evidence map›Paper›PMID 35314697›Full record

ArticleNPJ Parkinson's disease2022

Transcriptional analysis of peripheral memory T cells reveals Parkinson's disease-specific gene signatures.

Rekha Dhanwani, João Rodrigues Lima-Junior, Ashu Sethi, John Pham, Gregory Williams, April Frazier, Yaqian Xu, Amy W Amara, David G Standaert, Jennifer G Goldman and 6 more

Open access · goldAbstract read
In one paragraph

Article in NPJ Parkinson's disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 46 citations in OpenAlex.

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  15. Review
  16. Potential correlation between chronic periodontitis and Parkinson's disease.Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2024
    Article
  17. Article
  18. PINK1 is a target of T cell responses in Parkinson's disease.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Rekha DhanwaniDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
João Rodrigues Lima-JuniorDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Ashu SethiDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
John PhamDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Gregory WilliamsDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0001-9523-1781
April FrazierDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Yaqian XuAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0001-5890-3446
Amy W AmaraAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.
David G StandaertAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0003-2921-8348
Jennifer G GoldmanShirley Ryan AbilityLab, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.
Irene LitvanDepartment of Neuroscience, University of California San Diego, La Jolla, CA, 92093, USA.
Roy N AlcalayDepartment of Neurology, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Bjoern PetersDivision of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
David SulzerAligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD, USA.ORCID http://orcid.org/0000-0001-7632-0439
Cecilia S Lindestam Arlehamn *Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA. cecilia@lji.org.ORCID http://orcid.org/0000-0001-7302-8002
Alessandro Sette *Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA. alex@lji.org.
La Jolla Institute for Immunology · USNew York Psychoanalytic Society and Institute · USUniversity of Alabama at Birmingham · USColumbia University Irving Medical Center · USNorthwestern University · USUniversity of California San Diego · US

Funding

Project 3: LRRK2 mediated macrophage responses in PDP50NS108675 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI STANDAERT, DAVID G. · 2018 to 2022
$9.9M
Autoimmune Features of Neurodegenerative DisordersR01NS095435 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SETTE, ALESSANDRO, SULZER, DAVID · 2018 to 2022
$4.2M
Training in Immunological MechanismsT32AI125179 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2016 to 2025
$3.1M
Illumina HiSeq 2500 Sequencing SystemS10OD016262 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2013 to 2013
$600k
NIAID NIH HHS T32 AI125179NIH HHS S10 OD016262NINDS NIH HHS P50 NS108675NINDS NIH HHS R01 NS095435
6 · The paper itself

Abstract

Parkinson's disease (PD) is a multi-stage neurodegenerative disorder with largely unknown etiology. Recent findings have identified PD-associated autoimmune features including roles for T cells. To further characterize the role of T cells in PD, we performed RNA sequencing on PBMC and peripheral CD4 and CD8 memory T cell subsets derived from PD patients and age-matched healthy controls. When the groups were stratified by their T cell responsiveness to alpha-synuclein (α-syn) as a proxy for an ongoing inflammatory autoimmune response, the study revealed a broad differential gene expression profile in memory T cell subsets and a specific PD associated gene signature. We identified significant enrichment of transcriptomic signatures previously associated with PD, including for oxidative stress, phosphorylation, autophagy of mitochondria, cholesterol metabolism and inflammation, and the chemokine signaling proteins CX3CR1, CCR5, and CCR1. In addition, we identified genes in these peripheral cells that have previously been shown to be involved in PD pathogenesis and expressed in neurons, such as LRRK2, LAMP3, and aquaporin. Together, these findings suggest that features of circulating T cells with α-syn-specific responses in PD patients provide insights into the interactive processes that occur during PD pathogenesis and suggest potential intervention targets.

Identifiers

PMID35314697
PMCPMC8938520
OpenAlexW4221115508

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.