Evidence map›Paper›PMID 35312118›Full record

ArticleJournal of clinical laboratory analysis2022

Establishment of an in-house real-time RT-PCR assay for the detection of severe acute respiratory syndrome coronavirus 2 using the first World Health Organization international standard in a resource-limited country.

Linh Tung Nguyen, Phuong Minh Nguyen, Duc Viet Dinh, Hung Ngoc Pham, Lan Anh Thi Bui, Cuong Viet Vo, Ben Huu Nguyen, Hoan Duy Bui, Cuong Xuan Hoang, Nhat Minh Van Ngo and 10 more

Abstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Linh Tung NguyenDepartment of Occupational Medicine, Vietnam Military Medical University, Hanoi, Vietnam.
Phuong Minh NguyenDepartment of Occupational Medicine, Vietnam Military Medical University, Hanoi, Vietnam.
Duc Viet DinhDepartment of Epidemiology, Vietnam Military Medical University, Hanoi, Vietnam.
Hung Ngoc PhamDepartment of Epidemiology, Vietnam Military Medical University, Hanoi, Vietnam.
Lan Anh Thi BuiInstitute of Biomedicine, Vietnam-Russia Tropical Center, Hanoi, Vietnam.
Cuong Viet VoInstitute of Biomedicine, Vietnam-Russia Tropical Center, Hanoi, Vietnam.
Ben Huu NguyenDepartment of Occupational Medicine, Vietnam Military Medical University, Hanoi, Vietnam.
Hoan Duy BuiDepartment of Occupational Medicine, Vietnam Military Medical University, Hanoi, Vietnam.
Cuong Xuan HoangDepartment of Occupational Medicine, Vietnam Military Medical University, Hanoi, Vietnam.
Nhat Minh Van NgoDepartment of Human Anatomy, Vietnam Military Medical University, Hanoi, Vietnam.
Truong Tien DangDepartment of Human Anatomy, Vietnam Military Medical University, Hanoi, Vietnam.
Anh Ngoc DoDepartment of Parasitology, Vietnam Military Medical University, Hanoi, Vietnam.
Dung Dinh VuInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.
Linh Thuy NguyenInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.
Mai Ngoc NguyenInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.
Thu Hang Thi DinhInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.
Son Anh HoInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.
Luong Van HoangDepartment of Human Anatomy, Vietnam Military Medical University, Hanoi, Vietnam.
Su Xuan HoangInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi, Vietnam.ORCID https://orcid.org/0000-0002-5002-0419
Quyet DoMilitary Hospital 103, Vietnam Military Medical University, Hanoi, Vietnam.

Funding

Ministry of Science and Technology of Vietnam ĐTĐL.CN-29/20
6 · The paper itself

Abstract

backgroundThe COVID-19 pandemic caused by SARS-CoV-2 remains public health burdens and many unresolved issues worldwide. Molecular assays based on real-time RT-PCR are critical for the detection of SARS-CoV-2 in clinical specimens from patients suspected of COVID-19.

objectiveWe aimed to establish and validate an in-house real-time RT-PCR for the detection of SARS-CoV-2. METHODOLOGY: Primers and probes sets in our in-house real-time RT-PCR assay were designed in conserved regions of the N and E target genes. Optimized multiplex real-time RT-PCR assay was validated using the first WHO International Standard (NIBSC code: 20/146) and evaluated clinical performance.

resultsThe limit of detection validated using the first WHO International Standard was 159 IU/ml for both E and N target genes. The evaluation of clinical performance on 170 clinical samples showed a positive percent agreement of 100% and the negative percent agreement of 99.08% for both target genes. The Kappa value of 0.99 was an excellent agreement, the strong correlation of C

conclusionIn the present study, we established and validated an in-house real-time RT-PCR for molecular detection of SARS-CoV-2 in a resource-limited country.

Indexed as

COVID-19SARS-CoV-2HumansNasopharynxPandemicsReverse Transcriptase Polymerase Chain ReactionSensitivity and SpecificityWorld Health Organizationclinical performancereal-time RT-PCRSARS-CoV-2

Identifiers

PMID35312118
PMCPMC9102516

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.