Evidence map›Paper›PMID 35312013›Full record

ArticlePlant physiology2022

Sphingolipids with 2-hydroxy fatty acids aid in plasma membrane nanodomain organization and oxidative burst.

Tomomi Ukawa, Fumihiko Banno, Toshiki Ishikawa, Kota Kasahara, Yuuta Nishina, Rika Inoue, Keigo Tsujii, Masatoshi Yamaguchi, Takuya Takahashi, Yoichiro Fukao and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Sterols in plant biologyCell surface (Amsterdam, Netherlands) · 2025
    Review
  4. Review
  5. Imaging Plant Lipids with Fluorescent Reporters.Plants (Basel, Switzerland) · 2024
    Review
  6. Article
  7. Exploring lipid-protein interactions in plant membranes.Journal of experimental botany · 2024
    Review
  8. Article
  9. Article
  10. Membrane Dynamics Regulated by Cytoskeleton in Plant Immunity.International journal of molecular sciences · 2023
    Review
  11. Review
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Tomomi UkawaGraduate School of Science and Engineering, Saitama University, Sakuraku, Saitama 338-8570, Japan.
Fumihiko BannoCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.
Toshiki IshikawaGraduate School of Science and Engineering, Saitama University, Sakuraku, Saitama 338-8570, Japan.ORCID 0000-0001-8083-6542
Kota KasaharaCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.ORCID 0000-0003-0207-6271
Yuuta NishinaCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.
Rika InoueCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.
Keigo TsujiiCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.
Masatoshi YamaguchiGraduate School of Science and Engineering, Saitama University, Sakuraku, Saitama 338-8570, Japan.ORCID 0000-0002-1396-5376
Takuya TakahashiCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.ORCID 0000-0002-6782-9206
Yoichiro FukaoCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.ORCID 0000-0003-0760-570X
Maki Kawai-YamadaGraduate School of Science and Engineering, Saitama University, Sakuraku, Saitama 338-8570, Japan.ORCID 0000-0002-8732-052X
Minoru NaganoCollege of Life Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan.ORCID 0000-0002-1247-1673
Ritsumeikan University · JPSaitama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant sphingolipids mostly possess 2-hydroxy fatty acids (HFA), the synthesis of which is catalyzed by FA 2-hydroxylases (FAHs). In Arabidopsis (Arabidopsis thaliana), two FAHs (FAH1 and FAH2) have been identified. However, the functions of FAHs and sphingolipids with HFAs (2-hydroxy sphingolipids) are still unknown because of the lack of Arabidopsis lines with the complete deletion of FAH1. In this study, we generated a FAH1 mutant (fah1c) using CRISPR/Cas9-based genome editing. Sphingolipid analysis of fah1c, fah2, and fah1cfah2 mutants revealed that FAH1 hydroxylates very long-chain FAs (VLCFAs), whereas the substrates of FAH2 are VLCFAs and palmitic acid. However, 2-hydroxy sphingolipids are not completely lost in the fah1cfah2 double mutant, suggesting the existence of other enzymes catalyzing the hydroxylation of sphingolipid FAs. Plasma membrane (PM) analysis and molecular dynamics simulations revealed that hydroxyl groups of sphingolipid acyl chains play a crucial role in the organization of nanodomains, which are nanoscale liquid-ordered domains mainly formed by sphingolipids and sterols in the PM, through hydrogen bonds. In the PM of the fah1cfah2 mutant, the expression levels of 26.7% of the proteins, including defense-related proteins such as the pattern recognition receptors (PRRs) brassinosteroid insensitive 1-associated receptor kinase 1 and chitin elicitor receptor kinase 1, NADPH oxidase respiratory burst oxidase homolog D (RBOHD), and heterotrimeric G proteins, were lower than that in the wild-type. In addition, reactive oxygen species (ROS) burst was suppressed in the fah1cfah2 mutant after treatment with the pathogen-associated molecular patterns flg22 and chitin. These results indicated that 2-hydroxy sphingolipids are necessary for the organization of PM nanodomains and ROS burst through RBOHD and PRRs during pattern-triggered immunity.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneChitinFatty AcidsMixed Function OxygenasesReactive Oxygen SpeciesRespiratory BurstSphingolipidsArabidopsis ProteinsChitinFatty AcidsMixed Function OxygenasesReactive Oxygen SpeciesSphingolipids

Identifiers

PMID35312013
PMCPMC9157162
OpenAlexW4220870740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.