Evidence map›Paper›PMID 35311535›Full record

ArticlemBio2022

Resistance-Guided Mining of Bacterial Genotoxins Defines a Family of DNA Glycosylases.

Noah P Bradley, Katherine L Wahl, Jacob L Steenwyk, Antonis Rokas, Brandt F Eichman

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. An interstrand DNA crosslink glycosylase aidsProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Noah P Bradley *Department of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.
Katherine L Wahl *Department of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.
Jacob L SteenwykDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.ORCID 0000-0002-8436-595X
Antonis RokasDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.ORCID 0000-0002-7248-6551
Brandt F EichmanDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.ORCID 0000-0002-0965-2297
Vanderbilt University · US

Funding

TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR56AI146096 · NIAID · VANDERBILT UNIVERSITY · PI ROKAS, ANTONIS · 2020 to 2020
$592k
Mechanisms of DNA glycosylase mediated interstrand crosslink repairR01GM131071 · NIGMS · VANDERBILT UNIVERSITY · PI EICHMAN, BRANDT F · 2019 to 2019
$465k
NIAID NIH HHS R56 AI146096NIEHS NIH HHS T32 ES007028NIGMS NIH HHS R01 GM131071
6 · The paper itself

Abstract

Unique DNA repair enzymes that provide self-resistance against therapeutically important, genotoxic natural products have been discovered in bacterial biosynthetic gene clusters (BGCs). Among these, the DNA glycosylase AlkZ is essential for azinomycin B production and belongs to the HTH_42 superfamily of uncharacterized proteins. Despite their widespread existence in antibiotic producers and pathogens, the roles of these proteins in production of other natural products are unknown. Here, we determine the evolutionary relationship and genomic distribution of all HTH_42 proteins from

Indexed as

Biological ProductsDNA GlycosylasesStreptomycesAlkylating AgentsAnti-Bacterial AgentsDNADNA AdductsMutagensAlkylating AgentsAnti-Bacterial AgentsBiological ProductsDNADNA AdductsDNA GlycosylasesMutagensAlkZbiosynthetic gene clusterDNA cross-linkDNA glycosylaseDNA repairgenotoxinHTH_42intecalatornatural productphylogenetic treesecondary metabolismself-resistanceStreptomyces

Identifiers

PMID35311535
PMCPMC9040887
OpenAlexW4220882159

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.