ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2021
Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives.
Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.
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Who cites it
18 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A Systematic Review of Quantitative Methods for Evaluating Electronic Medication Administration Record and Bar-Coded Medication Administration Usability.Applied clinical informatics · 2023Pooled it
- AI-Based Automation for Medication Reconciliation: Scoping Review.Journal of medical Internet research · 2026Article
- Scalable medication extraction and discontinuation identification from electronic health records using large language models.Journal of clinical epidemiology · 2026Article
- VIEWER: an extensible visual analytics framework for enhancing mental healthcare.Journal of the American Medical Informatics Association : JAMIA · 2026Article
- A Systematic Review of Drug-Related InteractionsUtilizing Deep Learning and LLMs for Prediction and Mitigation.ACS omega · 2025Review
- Cross- & multi-lingual medication detection: a transformer-based analysis.BMC medical informatics and decision making · 2025Article
- Understanding contraceptive switching rationales from real world clinical notes using large language models.NPJ digital medicine · 2025Article
- Improving Phenotyping of Patients With Immune-Mediated Inflammatory Diseases Through Automated Processing of Discharge Summaries: Multicenter Cohort Study.JMIR medical informatics · 2025Article
- Is Boundary Annotation Necessary? Evaluating Boundary-Free Approaches to Improve Clinical Named Entity Annotation Efficiency: Case Study.JMIR medical informatics · 2024Article
- Clinical natural language processing for secondary uses.Journal of biomedical informatics · 2024Article
- Detection of Medication Mentions and Medication Change Events in Clinical Notes Using Transformer-Based Models.Studies in health technology and informatics · 2024Article
- Overview of the 2022 n2c2 shared task on contextualized medication event extraction in clinical notes.Journal of biomedical informatics · 2023Review
- A deep learning approach for medication disposition and corresponding attributes extraction.Journal of biomedical informatics · 2023Article
- Contextualized medication information extraction using Transformer-based deep learning architectures.Journal of biomedical informatics · 2023Article
- Extracting medication changes in clinical narratives using pre-trained language models.Journal of biomedical informatics · 2023Article
- Capturing Individual-level Social Determinants from Clinical Text.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023Article
- CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning.GigaScience · 2022Article
- Reducing Physicians' Cognitive Load During Chart Review: A Problem-Oriented Summary of the Patient Electronic Record.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2021Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding medication events in clinical narratives is essential to achieving a complete picture of a patient's medication history. While prior research has explored identification of medication changes in clinical notes, due to the longitudinal and narrative nature of clinical documentation, extraction of medication change alone without the necessary clinical context is insufficient for use in real-world applications, such as medication timeline generation and medication reconciliation. Here, we present a framework to capture multi-dimensional context of medication changes documented in clinical notes. We define specific contextual aspects pertinent to medication change events (i.e. Action, Negation, Temporality, Certainty, and Actor), describe the annotation process and challenges encountered while creating the dataset, and explore models based on state-of-the-art transformers to automate the task. The resulting dataset, Contextualized Medication Event Dataset (CMED), consisting of 9,013 medications annotated over 500 clinical notes, will be released to the community as a shared task in 2021-2022.
Indexed as
Identifiers
35308981PMC8861744What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.