Evidence map›Paper›PMID 35306288›Full record

ArticleEuropean journal of medicinal chemistry2022

Identification of histone deacetylase 10 (HDAC10) inhibitors that modulate autophagy in transformed cells.

Patrik Zeyen, Yanira Zeyn, Daniel Herp, Fereshteh Mahmoudi, Talha Z Yesiloglu, Frank Erdmann, Matthias Schmidt, Dina Robaa, Christophe Romier, Johannes Ridinger and 6 more

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Patrik ZeyenInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Yanira ZeynInstitute of Toxicology, Johannes-Gutenberg University of Mainz, Obere Zahlbacher Str. 67, 55131, Mainz, Germany.
Daniel HerpInstitute of Pharmaceutical Sciences, Albert-Ludwigs University of Freiburg, Albertstraße 25, 79104, Freiburg, Germany.
Fereshteh MahmoudiInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Talha Z YesilogluInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Frank ErdmannInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Matthias SchmidtInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Dina RobaaInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany.
Christophe RomierUniversité de Strasbourg, CNRS, INSERM, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), Département de Biologie Structurale Intégrative, 67404, Illkirch Cedex, France.
Johannes RidingerHopp Children's Cancer Center Heidelberg (KiTZ), 69120, Heidelberg, Germany; Clinical Cooperation Unit Pediatric Oncology, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), 69120, Heidelberg, Germany.
Corey J Herbst-GervasoniRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania Philadelphia, PA, 19104-6323, USA.
David W ChristiansonRoy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania Philadelphia, PA, 19104-6323, USA.
Ina OehmeHopp Children's Cancer Center Heidelberg (KiTZ), 69120, Heidelberg, Germany; Clinical Cooperation Unit Pediatric Oncology, German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), 69120, Heidelberg, Germany.
Manfred JungInstitute of Pharmaceutical Sciences, Albert-Ludwigs University of Freiburg, Albertstraße 25, 79104, Freiburg, Germany.
Oliver H KrämerInstitute of Toxicology, Johannes-Gutenberg University of Mainz, Obere Zahlbacher Str. 67, 55131, Mainz, Germany. Electronic address: okraemer@uni-mainz.de.
Wolfgang SipplInstitute of Pharmacy, Martin-Luther University of Halle-Wittenberg, Wolfgang-Langenbeck-Str. 2-4, 06120, Halle/Saale, Germany. Electronic address: wolfgang.sippl@pharmazie.uni-halle.de.
Martin Luther University Halle-Wittenberg · DEGerman Cancer Research Center · DEJohannes Gutenberg University Mainz · DEUniversity of Freiburg · DEUniversity of Pennsylvania · USCentre National de la Recherche Scientifique · FR

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM049758
6 · The paper itself

Abstract

Histone deacetylases (HDACs) are a family of 18 epigenetic modifiers that fall into 4 classes. Histone deacetylase inhibitors (HDACi) are valid tools to assess HDAC functions. HDAC6 and HDAC10 belong to the class IIb subgroup of the HDAC family. The targets and biological functions of HDAC10 are ill-defined. This lack of knowledge is due to a lack of specific and potent HDAC10 inhibitors with cellular activity. Here, we have synthesized and characterized piperidine-4-acrylhydroxamates as potent and highly selective inhibitors of HDAC10. This was achieved by targeting the acidic gatekeeper residue Glu274 of HDAC10 with a basic piperidine moiety that mimics the interaction of the polyamine substrate of HDAC10. We have confirmed the binding modes of selected inhibitors using X-ray crystallography. Promising candidates were selected based on their specificity by in vitro profiling using recombinant HDACs. The most promising HDAC10 inhibitors 10c and 13b were tested for specificity in acute myeloid leukemia (AML) cells with the FLT3-ITD oncogene. By immunoblot experiments we assessed the hyperacetylation of histones and tubulin-α, which are class I and HDAC6 substrates, respectively. As validated test for HDAC10 inhibition we used flow cytometry assessing autolysosome formation in neuroblastoma and AML cells. We demonstrate that 10c and 13b inhibit HDAC10 with high specificity over HDAC6 and with no significant impact on class I HDACs. The accumulation of autolysosomes is not a consequence of apoptosis and 10c and 13b are not toxic for normal human kidney cells. These data show that 10c and 13b are nanomolar inhibitors of HDAC10 with high specificity. Thus, our new HDAC10 inhibitors are tools to identify the downstream targets and functions of HDAC10 in cells.

Indexed as

Histone Deacetylase InhibitorsLeukemia, Myeloid, AcuteApoptosisAutophagyHistone Deacetylase 1Histone Deacetylase 6Histone DeacetylasesHumansHDAC10 protein, humanHistone Deacetylase 1Histone Deacetylase 6Histone Deacetylase InhibitorsHistone DeacetylasesAcute myeloid leukemia (AML)AutophagyChronic lymphoid leukemiaDrug designHDAC10Histone deacetylases (HDAC)Ligand dockingLysosomes

Identifiers

PMID35306288
PMCPMC9007901
OpenAlexW4220677226

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.