Evidence map›Paper›PMID 35303899›Full record

ArticleVirology journal2022

Circulation of genotypes of dengue virus serotype 2 in Guangzhou over a period of 20 years.

Liyun Jiang, Yuan Liu, Wenzhe Su, Yimin Cao, Qinlong Jing, Xinwei Wu, Zhicong Yang

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Liyun Jiang *Virology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China. year800325@163.com.ORCID 0000-0001-5625-7444
Yuan Liu *Pestcide and Disinfection Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Wenzhe SuVirology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Yimin CaoVirology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Qinlong JingEpidemiology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Xinwei WuMicrobiology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Zhicong YangEpidemiology Department, Guangzhou Centre for Disease Control and Prevention, Baiyunqu Qidelu 1, Guangdong, 510440, China.
Guangzhou Center for Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe dengue epidemic in Guangzhou has imposed a rising burden on society and health infrastructure. Here, we present the genotype data for dengue virus serotype 2 (DENV-2) to improve understanding of this dengue epidemic.

methodsWe sequenced the envelope gene of DENV-2 obtained from patient serum samples and subsequently performed maximum-likelihood phylogenetic analysis using PhyMLv3.1, maximum clade credibility analysis using BEAST v.1.10.4, and selection pressure analysis using Datamonkey 2.0.

resultsThe prevalent DENV-2 strains identified in Guangzhou region are related to those in Southeast Asian countries. In particular, the Malaysia/Indian subcontinent genotype is prevailing in Guangzhou with no apparent genotype shift having occurred over the past 20 years. However, episodic positive selection was detected at one site.

conclusionsLocal control of the DENV-2 epidemic in Guangzhou requires effective measures to prevent and monitor imported cases. Moreover, the shift between the Malaysia/Indian subcontinent genotype lineages, which originated at different time points, may account for the rise in DENV-2 cases in Guangzhou. Meanwhile, the low rate of dengue haemorrhagic fever in Guangzhou may be explained by the dominance of the less virulent Malaysia/Indian subcontinent genotype.

Indexed as

DengueDengue VirusGenotypeHumansMolecular EpidemiologyPhylogenySerogroupDengue virus serotype 2EpidemiologyMolecular evolutionPhylogeny

Identifiers

PMID35303899
PMCPMC8931567
OpenAlexW4220894758

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.