Evidence map›Paper›PMID 35302746›Full record

ArticleACS nano2022

Electronic Mapping of a Bacterial Genome with Dual Solid-State Nanopores and Active Single-Molecule Control.

Arthur Rand, Philip Zimny, Roland Nagel, Chaitra Telang, Justin Mollison, Aaron Bruns, Emily Leff, Walter W Reisner, William B Dunbar

Open access · greenAbstract read
In one paragraph

Article in ACS nano, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. DNA Barcodes Using a Dual Nanopore Device.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Arthur RandNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Philip ZimnyNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Roland NagelNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Chaitra TelangNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Justin MollisonNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Aaron BrunsNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Emily LeffNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.
Walter W ReisnerDepartment of Physics, McGill University, 3600 Rue University, Montreal, QC, Canada H3A 2T8.ORCID 0000-0003-3223-615X
William B DunbarNooma Bio, 250 Natural Bridges Drive, Santa Cruz, California 95060-5790, United States.ORCID 0000-0002-0913-318X
McGill University · CA

Funding

DNA barcoding via multi-scan and step control in dual-pore tug-of-warR21HG011236 · NHGRI · MCGILL UNIVERSITY · PI DUNBAR, WILLIAM BRUCE, REISNER, WALTER · 2020 to 2020
$477k
NHGRI NIH HHS R21 HG011236
6 · The paper itself

Abstract

We present an electronic mapping of a bacterial genome using solid-state nanopore technology. A dual-nanopore architecture and active control logic are used to produce single-molecule data that enables estimation of distances between physical tags installed at sequence motifs within double-stranded DNA. Previously developed "DNA flossing" control logic generates multiple scans of each captured DNA. We extended this logic in two ways: first, to automate "zooming out" on each molecule to progressively increase the number of tags scanned during flossing, and second, to automate recapture of a molecule that exited flossing to enable interrogation of the same and/or different regions of the molecule. Custom analysis methods were developed to produce consensus alignments from each multiscan event. The combined multiscanning and multicapture method was applied to the challenge of mapping from a heterogeneous mixture of single-molecule fragments that make up the

Indexed as

NanoporesDNAElectronicsEscherichia coliGenome, BacterialHumansNanotechnologyDNAbioinformaticsDNA barcodedual-nanoporegenomicsnanopore sensingnanotechnology

Identifiers

PMID35302746
PMCPMC9048701
OpenAlexW4220739013

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.