Evidence map›Paper›PMID 35302706›Full record

ArticleAngewandte Chemie (International ed. in English)2022

Catalytic DNA Polymerization Can Be Expedited by Active Product Release.

Pepijn G Moerman, Momcilo Gavrilov, Taekjip Ha, Rebecca Schulman

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Catalytic DNA Polymerization Can Be Expedited by Active Product Release.Angewandte Chemie (International ed. in English) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Pepijn G MoermanChemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0003-4255-2973
Momcilo GavrilovBiophysics & Biophysical Chemistry, Johns Hopkins University, Baltimore, MD 21205, USA.
Taekjip HaBiophysics & Biophysical Chemistry, Johns Hopkins University, Baltimore, MD 21205, USA.
Rebecca SchulmanChemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0003-4555-3162
Johns Hopkins University · USHoward Hughes Medical Institute · US

Funding

Single Molecule Studies of Nucleic Acids RemodelingR35GM122569 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Taekjip Ha · 2017 to 2026
$3.5M
Howard Hughes Medical InstituteNIGMS NIH HHS R35 GM122569NIH HHS R35 GM 122569
6 · The paper itself

Abstract

The sequence-specific hybridization of DNA facilitates its use as a building block for designer nanoscale structures and reaction networks that perform computations. However, the strong binding energy of Watson-Crick base pairing that underlies this specificity also causes the DNA dehybridization rate to depend sensitively on sequence length and temperature. This strong dependency imposes stringent constraints on the design of multi-step DNA reactions. Here we show how an ATP-dependent helicase, Rep-X, can drive specific dehybridization reactions at rates independent of sequence length, removing the constraints of equilibrium on DNA hybridization and dehybridization. To illustrate how this new capacity can speed up designed DNA reaction networks, we show that Rep-X extends the range of conditions where the primer exchange reaction, which catalytically adds a domain provided by a hairpin template to a DNA substrate, proceeds rapidly.

Indexed as

DNA, CatalyticBase PairingDNAKineticsPolymerizationDNADNA, CatalyticActive ProcessesBiophysicsCatalysisDNA NanotechnologyEnzyme CatalysisKinetics

Identifiers

PMID35302706
PMCPMC9325435
OpenAlexW4220983193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.