Evidence map›Paper›PMID 35302606›Full record

ArticleG3 (Bethesda, Md.)2022

Glutathione S-transferase: a candidate gene for berry color in muscadine grapes (Vitis rotundifolia).

Aruna Varanasi, Margaret Worthington, Lacy Nelson, Autumn Brown, Thomas Mason Chizk, Renee Threlfall, Luke Howard, Patrick Conner, Rosa Figueroa-Balderas, Mélanie Massonnet and 2 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Aruna VaranasiDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.
Margaret WorthingtonDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.ORCID 0000-0001-8019-165X
Lacy NelsonDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.
Autumn BrownDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.ORCID 0000-0001-8251-0773
Thomas Mason ChizkDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.
Renee ThrelfallDepartment of Food Science, University of Arkansas, Fayetteville, AR 72701, USA.ORCID 0000-0002-6715-7323
Luke HowardDepartment of Food Science, University of Arkansas, Fayetteville, AR 72701, USA.
Patrick ConnerDepartment of Horticulture, University of Georgia, Tifton, GA 31793, USA.ORCID 0000-0002-7889-0512
Rosa Figueroa-BalderasDepartment of Viticulture & Enology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0003-3321-1376
Mélanie MassonnetDepartment of Viticulture & Enology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0003-0993-9148
Dario CantuDepartment of Viticulture & Enology, University of California, Davis, Davis, CA 95616, USA.ORCID 0000-0002-4858-1508
John R ClarkDepartment of Horticulture, University of Arkansas, Fayetteville, AR 72701, USA.
University of Arkansas at Fayetteville · USUniversity of California, Davis · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Muscadine grapes (Vitis rotundifolia Michx.) are a specialty crop cultivated in the southern United States. Muscadines (2n = 40) belong to the Muscadinia subgenus of Vitis, while other cultivated grape species belong to the subgenus Euvitis (2n = 38). The muscadine berry color locus was mapped to a 0.8 Mbp region syntenic with chromosome 4 of Vitis vinifera. In this study, we identified glutathione S-transferase4 as a likely candidate gene for anthocyanin transport within the berry color locus. PCR and Kompetitive allele-specific PCR genotyping identified a single intragenic SNP (C/T) marker corresponding to a proline to leucine mutation within the muscadine glutathione S-transferase4 (VrGST4) that differentiated black (CC and CT) from bronze (TT) muscadines in 126 breeding selections, 76 cultivars, and 359 progeny from 3 mapping populations. Anthocyanin profiling on a subset of the progeny indicated a dominant VrGST4 action. VrGST4 was expressed in skins of both black and bronze muscadines at similar levels. While nonsynonymous polymorphisms between black and bronze muscadines were discovered in VrGSTF12, another Type I GST-coding gene in the muscadine color locus, this gene was ruled out as a possible candidate for berry color because RNA sequencing indicated it is not expressed in berry skins at véraison from black or bronze genotypes. These results suggest that the bronze phenotype in muscadines is regulated by a mechanism distinct from the MybA gene cluster responsible for berry color variation in Vitis vinifera.

Indexed as

VitisAnthocyaninsAntioxidantsFruitGlutathioneGlutathione TransferasePlant BreedingAnthocyaninsAntioxidantsGlutathioneGlutathione Transferaseanthocyaninberry colorglutathione S-transferaseMuscadinia rotundifoliaVitis

Identifiers

PMID35302606
PMCPMC9073687
OpenAlexW4220955225

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.