Evidence map›Paper›PMID 35302293›Full record

ArticleInternational journal for numerical methods in biomedical engineering2022

Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle.

Agnieszka Borowska, Hao Gao, Alan Lazarus, Dirk Husmeier

Abstract read
In one paragraph

Article in International journal for numerical methods in biomedical engineering, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle.International journal for numerical methods in biomedical engineering · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Agnieszka BorowskaSchool of Mathematics and Statistics, University of Glasgow, Glasgow, UK.ORCID 0000-0001-9123-6227
Hao GaoSchool of Mathematics and Statistics, University of Glasgow, Glasgow, UK.ORCID 0000-0001-6852-9435
Alan LazarusSchool of Mathematics and Statistics, University of Glasgow, Glasgow, UK.
Dirk HusmeierSchool of Mathematics and Statistics, University of Glasgow, Glasgow, UK.ORCID 0000-0003-1673-7413

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We consider parameter inference in cardio-mechanic models of the left ventricle, in particular the one based on the Holtzapfel-Ogden (HO) constitutive law, using clinical in vivo data. The equations underlying these models do not admit closed form solutions and hence need to be solved numerically. These numerical procedures are computationally expensive making computational run times associated with numerical optimisation or sampling excessive for the uptake of the models in the clinical practice. To address this issue, we adopt the framework of Bayesian optimisation (BO), which is an efficient statistical technique of global optimisation. BO seeks the optimum of an unknown black-box function by sequentially training a statistical surrogate-model and using it to select the next query point by leveraging the associated exploration-exploitation trade-off. To guarantee that the estimates based on the in vivo data are realistic also for high-pressures, unobservable in vivo, we include a penalty term based on a previously published empirical law developed using ex vivo data. Two case studies based on real data demonstrate that the proposed BO procedure outperforms the state-of-the-art inference algorithm for the HO constitutive law.

Indexed as

HeartHeart VentriclesAlgorithmsBayes Theorembiomechanical model calibrationglobal optimisationHolzapfel-Ogden constitutive lawstatistical inference

Identifiers

PMID35302293
PMCPMC9285944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.