Evidence map›Paper›PMID 35301508›Full record

ArticleNature immunology2022

Type I interferon transcriptional network regulates expression of coinhibitory receptors in human T cells.

Tomokazu S Sumida, Shai Dulberg, Jonas C Schupp, Matthew R Lincoln, Helen A Stillwell, Pierre-Paul Axisa, Michela Comi, Avraham Unterman, Naftali Kaminski, Asaf Madi and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 151 citations in OpenAlex.

  1. Trial
  2. Distinct CD8Cancer cell · 2025
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  4. CD4Clinical and experimental immunology · 2021
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42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Tomokazu S Sumida *Departments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA. tomokazu.sumida@yale.edu.ORCID http://orcid.org/0000-0002-9806-2642
Shai Dulberg *Department of Pathology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel.ORCID http://orcid.org/0000-0001-8304-5324
Jonas C Schupp *Section of Pulmonary, Critical Care and Sleep Medicine Section, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-7714-8076
Matthew R LincolnDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-2962-6253
Helen A StillwellDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA.
Pierre-Paul AxisaDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1446-3922
Michela ComiDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-0109-4868
Avraham UntermanSection of Pulmonary, Critical Care and Sleep Medicine Section, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-0965-3326
Naftali KaminskiSection of Pulmonary, Critical Care and Sleep Medicine Section, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5917-4601
Asaf MadiDepartment of Pathology, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel. asafmadi@tauex.tau.ac.il.ORCID http://orcid.org/0000-0003-3441-3228
Vijay K KuchrooEvergrande Center for Immunologic Diseases and Ann Romney Center for Neurologic Diseases, Harvard Medical School and Brigham and Women's Hospital, Boston, MA, USA.
David A HaflerDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4664-535X
Yale University · USBroad Institute · USTel Aviv University · ILBrigham and Women's Hospital · USUniversity of Toronto · CA

Funding

Role of Negative Costimulation in Regulation of AutoimmunityP01AI039671 · NIAID · YALE UNIVERSITY · PI VIJAY K. KUCHROO · 1996 to 2026
$51.7M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI Albert C Shaw · 2010 to 2026
$50.4M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI MARCUS W BOSENBERG, Harriet M. Kluger · 2006 to 2026
$43.9M
Transgenic/KnockoutP01AI056299 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI BLAZAR, BRUCE R · 2003 to 2023
$42.5M
Transgenic / Knock-out mouse coreP01AI073748 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI HAFLER, DAVID A. · 2008 to 2019
$17.1M
Project 2: Genes required for dendritic cell responses to pathogens and T cellsU19AI133524 · NIAID · HARVARD MEDICAL SCHOOL · PI SHARPE, ARLENE H. · 2017 to 2021
$12.3M
Genomic Analysis of Tissue and Cellular Heterogeneity in IPFR01HL127349 · NHLBI · YALE UNIVERSITY · PI BENOS, PANAGIOTIS V, KAMINSKI, NAFTALI · 2015 to 2025
$5.9M
Role of Th1 specific cell surface molecule Tim-3 in EAE.R01NS045937 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KUCHROO, VIJAY K. · 2003 to 2016
$4.9M
T CELL RESPONSE TO MYELIN PROTEOLIPID PROTEINR01NS030843 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KUCHROO, VIJAY K. · 1998 to 2019
$4.1M
Epithelial Protective Effects of Thyroid Hormone Signaling in FibrosisR01HL141852 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2019 to 2022
$3.4M
Role of Tim-3:Bat-3 pathway in inducing tolerogenic DCs and peripheral toleranceR01AI144166 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI VIJAY K. KUCHROO · 2020 to 2026
$3.2M
Normal Aging Lung Cell Atlas (NALCA)U01HL145567 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2019 to 2022
$2.8M
BLRD VA I01 BX004661NCI NIH HHS P50 CA121974NHLBI NIH HHS R01 HL127349NHLBI NIH HHS R01 HL141852NHLBI NIH HHS U01 HL145567NIAID NIH HHS P01 AI039671NIAID NIH HHS P01 AI056299NIAID NIH HHS P01 AI073748NIAID NIH HHS R01 AI144166NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI133524NINDS NIH HHS R01 NS030843NINDS NIH HHS R01 NS045937NINDS NIH HHS R25 NS079193
6 · The paper itself

Abstract

Although inhibition of T cell coinhibitory receptors has revolutionized cancer therapy, the mechanisms governing their expression on human T cells have not been elucidated. In the present study, we show that type 1 interferon (IFN-I) regulates coinhibitory receptor expression on human T cells, inducing PD-1/TIM-3/LAG-3 while inhibiting TIGIT expression. High-temporal-resolution mRNA profiling of IFN-I responses established the dynamic regulatory networks uncovering three temporal transcriptional waves. Perturbation of key transcription factors (TFs) and TF footprint analysis revealed two regulator modules with different temporal kinetics that control expression of coinhibitory receptors and IFN-I response genes, with SP140 highlighted as one of the key regulators that differentiates LAG-3 and TIGIT expression. Finally, we found that the dynamic IFN-I response in vitro closely mirrored T cell features in acute SARS-CoV-2 infection. The identification of unique TFs controlling coinhibitory receptor expression under IFN-I response may provide targets for enhancement of immunotherapy in cancer, infectious diseases and autoimmunity.

Indexed as

COVID-19Interferon Type IGene Regulatory NetworksHumansReceptors, Antigen, T-CellReceptors, ImmunologicSARS-CoV-2T-LymphocytesInterferon Type IReceptors, Antigen, T-CellReceptors, Immunologic

Identifiers

PMID35301508
PMCPMC8989655
OpenAlexW4226055473

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.