Evidence map›Paper›PMID 35301314›Full record

ArticleNature communications2022

De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report.

Shiv Gandhi, Jonathan Klein, Alexander J Robertson, Mario A Peña-Hernández, Michelle J Lin, Pavitra Roychoudhury, Peiwen Lu, John Fournier, David Ferguson, Shah A K Mohamed Bakhash and 13 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 198 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
198citing papers in PubMed, 2 pooled it
30.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

198 citing papers in PubMed, 2 syntheses or guidelines pooled it, 298 citations in OpenAlex.

  1. Pooled it
  2. Guideline
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  11. Immune Status and SARS-CoV-2 Viral Dynamics.The Journal of infectious diseases · 2023
    Trial
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  13. Article
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  15. Oral lipid prodrug V2043 (1-Antimicrobial agents and chemotherapy · 2026
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

138 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Update of
    2021
5 · Who and what money

Authors and funding

23 authors at 4 institutions in 1 country.

Shiv Gandhi *Section of Infectious Diseases, Department of Medicine, Yale University School of Medicine, New Haven, CT, USA. shiv.gandhi@yale.edu.ORCID 0000-0002-1850-187X
Jonathan Klein *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3552-7684
Alexander J Robertson *Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.ORCID 0000-0003-4607-4470
Mario A Peña-Hernández *Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Michelle J LinDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, USA.ORCID 0000-0002-6925-9948
Pavitra RoychoudhuryDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, USA.
Peiwen LuDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6118-872X
John FournierSection of Infectious Diseases, Department of Medicine, Yale University School of Medicine, New Haven, CT, USA.
David FergusonCenter for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.
Shah A K Mohamed BakhashDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, USA.
M Catherine MuenkerDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.ORCID 0000-0002-0450-0868
Ariktha SrivathsanDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.
Elsio A WunderDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.ORCID 0000-0002-5239-8511
Nicholas KerantzasDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.
Wenshuai WangDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Brett LindenbachDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.
Anna PyleDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Craig B WilenDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0003-2495-9403
Onyema OgbuaguSection of Infectious Diseases, Department of Medicine, Yale University School of Medicine, New Haven, CT, USA.
Alexander L GreningerDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA, USA.
Akiko IwasakiDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-7824-9856
Wade L SchulzCenter for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.ORCID 0000-0002-2048-4028
Albert I KoSection of Infectious Diseases, Department of Medicine, Yale University School of Medicine, New Haven, CT, USA. albert.ko@yale.edu.ORCID 0000-0001-9023-2339
Yale University · USUniversity of Washington · USHoward Hughes Medical Institute · USYale New Haven Hospital · US

Funding

TRAINING IN THE PATHOGENESIS OF INFECTIOUS DISEASEST32AI007517 · NIAID · YALE UNIVERSITY · PI Jaimie Meyer, Albert C Shaw · 1997 to 2026
$6.1M
NIAID NIH HHS T32 AI007517U.S. Department of Health & Human Services | National Institutes of Health (NIH) 2T32AI007517-21A1
6 · The paper itself

Abstract

SARS-CoV-2 remdesivir resistance mutations have been generated in vitro but have not been reported in patients receiving treatment with the antiviral agent. We present a case of an immunocompromised patient with acquired B-cell deficiency who developed an indolent, protracted course of SARS-CoV-2 infection. Remdesivir therapy alleviated symptoms and produced a transient virologic response, but her course was complicated by recrudescence of high-grade viral shedding. Whole genome sequencing identified a mutation, E802D, in the nsp12 RNA-dependent RNA polymerase, which was not present in pre-treatment specimens. In vitro experiments demonstrated that the mutation conferred a ~6-fold increase in remdesivir IC

Indexed as

COVID-19 Drug TreatmentAdenosine MonophosphateAlanineAntibodies, Monoclonal, HumanizedCoronavirus RNA-Dependent RNA PolymeraseFemaleHumansImmunocompromised HostMutationSARS-CoV-2Adenosine MonophosphateAlanineAntibodies, Monoclonal, HumanizedcasirivimabCoronavirus RNA-Dependent RNA PolymeraseimdevimabNSP12 protein, SARS-CoV-2remdesivir

Identifiers

PMID35301314
PMCPMC8930970
OpenAlexW4226163566

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.